PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AMDW01037002.1_FGP001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | GRAS | ||||||||
Protein Properties | Length: 126aa MW: 14152.3 Da PI: 6.3875 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 44.8 | 2e-14 | 20 | 125 | 2 | 109 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykal.ppsetseknsseelaalklfsevs 88 v lL ecA +v++g++e+a+ ++++ l ++ p+qRl + ++ La+rl++s ++l al ps+ + s+ aa++ f+++ AMDW01037002.1_FGP001 20 VPLLHECASHVTEGSFEKADFSFKKIRMLT-IADGPLQRLSTIIVDSLAHRLLSSIQGLPGALiDPSDYF--EKSTLRAAHHNFFKLN 104 6799**********************9876.5667*******************9999998884444444..35555567778***** PP GRAS 89 PilkfshltaNqaIleavege 109 P+l +++t N+aI+ea+e e AMDW01037002.1_FGP001 105 PYLSTGFVTINRAIMEAMEDE 125 ******************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 10.547 | 1 | 126 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 7.0E-12 | 20 | 125 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 126 aa Download sequence Send to blast |
MMHGLWVQDQ GMVDHLAQLV PLLHECASHV TEGSFEKADF SFKKIRMLTI ADGPLQRLST 60 IIVDSLAHRL LSSIQGLPGA LIDPSDYFEK STLRAAHHNF FKLNPYLSTG FVTINRAIME 120 AMEDEK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AMDW01037002.1_FGP001 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK242794 | 0.0 | AK242794.1 Oryza sativa Japonica Group cDNA, clone: J090058A05, full insert sequence. | |||
GenBank | AP014967 | 0.0 | AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015616660.1 | 5e-83 | scarecrow-like protein 3 isoform X1 | ||||
Refseq | XP_015616661.1 | 1e-84 | scarecrow-like protein 3 isoform X2 | ||||
TrEMBL | A0A0P0XYU0 | 4e-86 | A0A0P0XYU0_ORYSJ; Os11g0141550 protein | ||||
STRING | OS11T0141550-01 | 7e-87 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP53814 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G50420.1 | 1e-13 | scarecrow-like 3 |