PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AMDW01036477.1_FGP001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | G2-like | ||||||||
Protein Properties | Length: 37aa MW: 4163.91 Da PI: 10.8492 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 50.6 | 4.3e-16 | 1 | 29 | 27 | 55 |
G2-like 27 AtPktilelmkvkgLtlehvkSHLQkYRl 55 AtPk +l+lm+v gL++ hvkSHLQ+YR+ AMDW01036477.1_FGP001 1 ATPKLVLQLMNVRGLSIGHVKSHLQMYRS 29 9***************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.31E-5 | 1 | 30 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 9.427 | 1 | 32 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.3E-14 | 1 | 30 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 3.0E-11 | 1 | 31 | IPR006447 | Myb domain, plants |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 37 aa Download sequence Send to blast |
ATPKLVLQLM NVRGLSIGHV KSHLQMYRSK KIDESGQ |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AMDW01036477.1_FGP001 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK241171 | 3e-53 | AK241171.1 Oryza sativa Japonica Group cDNA, clone: J065117O05, full insert sequence. | |||
GenBank | GU046789 | 3e-53 | GU046789.1 Oryza sativa Japonica Group cultivar Dongjin-byeo myb-like DNA-binding domain-containing protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015620339.1 | 3e-17 | probable transcription factor RL9 | ||||
TrEMBL | A0A0E0F1F3 | 4e-17 | A0A0E0F1F3_9ORYZ; Uncharacterized protein | ||||
STRING | OGLUM12G00290.1 | 9e-17 | (Oryza glumipatula) | ||||
STRING | OMERI11G00620.3 | 2e-17 | (Oryza meridionalis) | ||||
STRING | ORUFI12G00420.1 | 9e-17 | (Oryza rufipogon) | ||||
STRING | OS11T0106100-00 | 2e-17 | (Oryza sativa) | ||||
STRING | OS12T0105600-01 | 1e-16 | (Oryza sativa) | ||||
STRING | ONIVA12G00410.1 | 9e-17 | (Oryza nivara) | ||||
STRING | OPUNC11G00360.2 | 1e-16 | (Oryza punctata) | ||||
STRING | LPERR11G00400.1 | 1e-16 | (Leersia perrieri) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G38300.1 | 6e-17 | G2-like family protein |