PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AMDW01035599.1_FGP001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | GRAS | ||||||||
Protein Properties | Length: 160aa MW: 17957.7 Da PI: 5.0509 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 100.3 | 2.7e-31 | 3 | 160 | 47 | 203 |
GRAS 47 eALaarlarsvselykal.ppsetseknsseelaalklfsevsPilkfshltaNqaIleavegeervHiiDfd..isqGlQWpaLlqa 131 La+rl+r v+ + +al ps + ++ aa++ f+e+sP++k+++++ N+aI+eave+e+ vH++ ++ +q+ QW+ Ll++ AMDW01035599.1_FGP001 3 DCLARRLLRPVQAITDALiDPSVYL--DRRSVRAARRGFFELSPFPKVAFVVGNRAIVEAVENESLVHVVGMSgpFTQPCQWIQLLHE 88 6799999999999999985444443..34555578899**********************************86679*********** PP GRAS 132 LasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeL....rvkpgEala 203 L Rpegpp +R+T+v++ + e l +++e ++ Aeelg++f+f+ v+ +ledl++++L ++k+gEal+ AMDW01035599.1_FGP001 89 LRRRPEGPPrVVRLTVVHD----DGELLAKMAELVSDEAEELGMEFQFHG-VVGQLEDLDFSNLrnvlEIKSGEALV 160 *****9988789*******....***************************.7999****999985555677788875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 21.914 | 1 | 160 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 9.5E-29 | 3 | 160 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 160 aa Download sequence Send to blast |
MVDCLARRLL RPVQAITDAL IDPSVYLDRR SVRAARRGFF ELSPFPKVAF VVGNRAIVEA 60 VENESLVHVV GMSGPFTQPC QWIQLLHELR RRPEGPPRVV RLTVVHDDGE LLAKMAELVS 120 DEAEELGMEF QFHGVVGQLE DLDFSNLRNV LEIKSGEALV |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AMDW01035599.1_FGP001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012619 | 0.0 | CP012619.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 11 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015616103.1 | 1e-109 | scarecrow-like protein 3 | ||||
TrEMBL | A0A0E0BF50 | 1e-110 | A0A0E0BF50_9ORYZ; Uncharacterized protein | ||||
STRING | OGLUM11G02280.1 | 1e-110 | (Oryza glumipatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP604 | 38 | 176 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G50420.1 | 4e-20 | scarecrow-like 3 |