PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AMDW01030998.1_FGP001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | GRAS | ||||||||
Protein Properties | Length: 107aa MW: 12531.4 Da PI: 8.2337 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 90.3 | 3.2e-28 | 1 | 102 | 234 | 335 |
GRAS 234 lsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerlee 321 ++P+v+v + + ++++ F++rf eal +ysa fd+l+a++pr+++er +Er +lgr++ nv+acega+r+ r et+++W+ r ++ AMDW01030998.1_FGP001 1 MRPHVFVQCVVNGAYGAPFFVTRFREALFFYSAHFDMLDATIPRDKDERLLIERDILGRWALNVIACEGADRVDRPETYKQWQVRNHR 88 58************************************************************************************** PP GRAS 322 aGFkpvplsekaak 335 aG+k++pl+ ++++ AMDW01030998.1_FGP001 89 AGLKQLPLEAEVVE 102 ********998775 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03514 | 1.1E-25 | 1 | 102 | IPR005202 | Transcription factor GRAS |
PROSITE profile | PS50985 | 21.658 | 1 | 107 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 107 aa Download sequence Send to blast |
MRPHVFVQCV VNGAYGAPFF VTRFREALFF YSAHFDMLDA TIPRDKDERL LIERDILGRW 60 ALNVIACEGA DRVDRPETYK QWQVRNHRAG LKQLPLEAEV VELVRNK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AMDW01030998.1_FGP001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC137064 | 1e-147 | AC137064.4 Oryza sativa Japonica Group cultivar Nipponbare chromosome 11 clone OSJNBb0003C04 map S10003, complete sequence. | |||
GenBank | AP014967 | 1e-147 | AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015615829.1 | 1e-65 | scarecrow-like protein 9 | ||||
Swissprot | P0C884 | 6e-41 | SCL34_ARATH; Scarecrow-like protein 34 | ||||
TrEMBL | A0A0E0J5K2 | 1e-64 | A0A0E0J5K2_ORYNI; Uncharacterized protein | ||||
STRING | ONIVA11G23190.1 | 2e-65 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP37416 | 2 | 3 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G29065.1 | 3e-43 | GRAS family protein |