PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AMDW01030762.1_FGP001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | WRKY | ||||||||
Protein Properties | Length: 124aa MW: 12586.7 Da PI: 4.5852 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 30.2 | 9.1e-10 | 14 | 47 | 25 | 59 |
EEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 25 YrCtsagCpvkkkversaedpkvveitYegeHnhe 59 Y+C+ ++C v+k + rsa d++++e++ +g Hnh+ AMDW01030762.1_FGP001 14 YQCALPNCGVRKSITRSA-DGQTIETVCKGCHNHP 47 9*****************.***************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF118290 | 1.83E-7 | 3 | 48 | IPR003657 | WRKY domain |
Pfam | PF03106 | 3.0E-7 | 3 | 47 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 1.2E-6 | 14 | 48 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 124 aa Download sequence Send to blast |
STIQGGLCPT VFSYQCALPN CGVRKSITRS ADGQTIETVC KGCHNHPRQS LRWLGDGSER 60 LEPISQEIVL LEASDASGAA GGPSVPGTGN GHGQSSGSSD SCRDDDGDLG IDGNASVGDA 120 NAVK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AMDW01030762.1_FGP001 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK103696 | 0.0 | AK103696.1 Oryza sativa Japonica Group cDNA clone:J033136J23, full insert sequence. | |||
GenBank | AP005416 | 0.0 | AP005416.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, BAC clone:OSJNBb0094P23. | |||
GenBank | AP014964 | 0.0 | AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012616 | 0.0 | CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015648157.1 | 2e-80 | zinc finger BED domain-containing protein RICESLEEPER 2-like isoform X1 | ||||
Refseq | XP_015648158.1 | 2e-80 | zinc finger BED domain-containing protein RICESLEEPER 2-like isoform X2 | ||||
TrEMBL | I1QGE9 | 1e-81 | I1QGE9_ORYGL; Uncharacterized protein | ||||
TrEMBL | Q0J7E9 | 5e-79 | Q0J7E9_ORYSJ; Os08g0198900 protein | ||||
STRING | ORGLA08G0050000.1 | 2e-82 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP14032 | 10 | 24 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G38470.1 | 2e-09 | WRKY DNA-binding protein 33 |