PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AMDW01030203.1_FGP001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | B3 | ||||||||
Protein Properties | Length: 87aa MW: 10087.7 Da PI: 11.4136 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 46.5 | 6.7e-15 | 16 | 81 | 32 | 96 |
--SEEEEEETTS-EEEEEE..EEETTE....EEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEE CS B3 32 esktltledesgrsWevkliyrkksgr....yvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkv 96 + + ++ ++ g++W+ + + ksgr +l +GW++Fv++n+L +gD+++++l+++ s+ +++v+ AMDW01030203.1_FGP001 16 R--QTVVLQRMGQRWDTVM--QTKSGRcttrRFLINGWSRFVRDNRLGVGDICLLELKKHdSKLTMTVHT 81 3..3556778*********..555555224445557*********************9776999888875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 11.547 | 1 | 83 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 7.07E-13 | 5 | 80 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 2.8E-15 | 7 | 80 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 7.32E-14 | 8 | 81 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 3.4E-13 | 9 | 82 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 87 aa Download sequence Send to blast |
ELGARYAAAV HLPDRRQTVV LQRMGQRWDT VMQTKSGRCT TRRFLINGWS RFVRDNRLGV 60 GDICLLELKK HDSKLTMTVH TIFSQQS |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AMDW01030203.1_FGP001 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012611 | 1e-128 | CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015633049.1 | 7e-34 | B3 domain-containing protein Os03g0619600 | ||||
Refseq | XP_015633050.1 | 7e-34 | B3 domain-containing protein Os03g0619600 | ||||
Swissprot | Q6AV22 | 6e-35 | Y3196_ORYSJ; B3 domain-containing protein Os03g0619600 | ||||
TrEMBL | A0A0E0D3R4 | 2e-55 | A0A0E0D3R4_9ORYZ; Uncharacterized protein | ||||
TrEMBL | A0A0E0D3R5 | 2e-55 | A0A0E0D3R5_9ORYZ; Uncharacterized protein | ||||
STRING | OMERI03G23090.1 | 3e-56 | (Oryza meridionalis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP585 | 31 | 172 |
Publications ? help Back to Top | |||
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