PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | AMDW01025897.1_FGP001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
||||||||
Family | NF-YC | ||||||||
Protein Properties | Length: 104aa MW: 11861.6 Da PI: 6.107 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 163 | 4.3e-51 | 3 | 96 | 8 | 101 |
NF-YC 8 kqiekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdi 95 ++ie++tdfknh+lPlarikki+kadedv+mi+aeaPv++++ace+filelt r w haeenkrrtl+ksdiaaa++rt++fdflvdi AMDW01025897.1_FGP001 3 REIEHTTDFKNHNLPLARIKKIMKADEDVRMIAAEAPVVFARACEMFILELTHRGWAHAEENKRRTLQKSDIAAAIARTEVFDFLVDI 90 579************************************************************************************* PP NF-YC 96 vprdel 101 vprde AMDW01025897.1_FGP001 91 VPRDEA 96 ****86 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 1.63E-30 | 3 | 87 | IPR009072 | Histone-fold |
Pfam | PF00808 | 7.4E-22 | 15 | 78 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene3D | G3DSA:1.10.20.10 | 1.8E-37 | 16 | 93 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 104 aa Download sequence Send to blast |
QYREIEHTTD FKNHNLPLAR IKKIMKADED VRMIAAEAPV VFARACEMFI LELTHRGWAH 60 AEENKRRTLQ KSDIAAAIAR TEVFDFLVDI VPRDEAKDAE AAAA |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_B | 2e-55 | 1 | 93 | 3 | 95 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 65 | 71 | RRTLQKS |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Component of the NF-Y/HAP transcription factor complex. {ECO:0000250}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | AMDW01025897.1_FGP001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AB288044 | 1e-174 | AB288044.1 Oryza sativa Japonica Group OsHAP5D gene for HAP5 subunit of HAP complex, complete cds. | |||
GenBank | AK108510 | 1e-174 | AK108510.1 Oryza sativa Japonica Group cDNA clone:002-144-A03, full insert sequence. | |||
GenBank | AP000364 | 1e-174 | AP000364.1 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0026F07. | |||
GenBank | AP005148 | 1e-174 | AP005148.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, BAC clone:B1142B04. | |||
GenBank | AP014964 | 1e-174 | AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012616 | 1e-174 | CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence. | |||
GenBank | CT828952 | 1e-174 | CT828952.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN028G23, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015648381.1 | 1e-71 | nuclear transcription factor Y subunit C-6 | ||||
Swissprot | Q9XE33 | 1e-72 | NFYC6_ORYSJ; Nuclear transcription factor Y subunit C-6 | ||||
TrEMBL | A0A0E0IDS0 | 3e-70 | A0A0E0IDS0_ORYNI; Uncharacterized protein | ||||
TrEMBL | A2YWL9 | 3e-70 | A2YWL9_ORYSI; Uncharacterized protein | ||||
TrEMBL | I1QJT4 | 3e-70 | I1QJT4_ORYGL; Uncharacterized protein | ||||
STRING | OS08T0496500-01 | 4e-71 | (Oryza sativa) | ||||
STRING | ONIVA08G21210.1 | 4e-71 | (Oryza nivara) | ||||
STRING | ORGLA08G0168500.1 | 4e-71 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3856 | 36 | 76 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G54830.3 | 1e-56 | nuclear factor Y, subunit C3 |
Publications ? help Back to Top | |||
---|---|---|---|
|