PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AMDW01018498.1_FGP001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | LBD | ||||||||
Protein Properties | Length: 82aa MW: 9235.73 Da PI: 8.656 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 122.4 | 2.4e-38 | 1 | 82 | 5 | 86 |
DUF260 5 CkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqq 86 Ck+lrr+C+++Cv+apyfpae++++fa+vh++FGasnv+k+l ++p+ +r+da+sslvyeA+ar+rdPvyG+v+ i+ lqqq AMDW01018498.1_FGP001 1 CKLLRRRCTSECVFAPYFPAEEAQRFAMVHRVFGASNVSKMLLDVPPPQRPDAVSSLVYEANARMRDPVYGCVAAISFLQQQ 82 ********************************************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 23.074 | 1 | 82 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.7E-37 | 1 | 82 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 82 aa Download sequence Send to blast |
CKLLRRRCTS ECVFAPYFPA EEAQRFAMVH RVFGASNVSK MLLDVPPPQR PDAVSSLVYE 60 ANARMRDPVY GCVAAISFLQ QQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 6e-38 | 1 | 82 | 15 | 96 | LOB family transfactor Ramosa2.1 |
5ly0_B | 6e-38 | 1 | 82 | 15 | 96 | LOB family transfactor Ramosa2.1 |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AMDW01018498.1_FGP001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK109211 | 1e-119 | AK109211.1 Oryza sativa Japonica Group cDNA clone:002-156-D02, full insert sequence. | |||
GenBank | AK241761 | 1e-119 | AK241761.1 Oryza sativa Japonica Group cDNA, clone: J065205C18, full insert sequence. | |||
GenBank | AP014967 | 1e-119 | AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence. | |||
GenBank | AP014968 | 1e-119 | AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence. | |||
GenBank | BX000494 | 1e-119 | BX000494.2 Oryza sativa chromosome 12, . BAC OSJNBa0052H10 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence. | |||
GenBank | BX000497 | 1e-119 | BX000497.1 Oryza sativa chromosome 11, . BAC OSJNBa0010K05 of library OSJNBa from chromosome 11 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015618081.1 | 1e-54 | LOB domain-containing protein 12 | ||||
Refseq | XP_015618082.1 | 1e-54 | LOB domain-containing protein 12 | ||||
Refseq | XP_015618083.1 | 1e-54 | LOB domain-containing protein 12 | ||||
Refseq | XP_025877106.1 | 1e-54 | LOB domain-containing protein 12 | ||||
Refseq | XP_025877964.1 | 1e-54 | LOB domain-containing protein 12 | ||||
Swissprot | Q9SHE9 | 5e-41 | LBD4_ARATH; LOB domain-containing protein 4 | ||||
TrEMBL | I1R3A9 | 4e-54 | I1R3A9_ORYGL; Uncharacterized protein | ||||
STRING | ORGLA12G0001500.1 | 6e-55 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP882 | 38 | 150 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G31320.1 | 2e-43 | LOB domain-containing protein 4 |