PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AMDW01013172.1_FGP001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | GRAS | ||||||||
Protein Properties | Length: 53aa MW: 5686.32 Da PI: 3.5645 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 21.5 | 2.6e-07 | 7 | 50 | 199 | 240 |
GRAS 199 gEalaVnlvlqlhrlldesvsles..erdevLklvkslsPkvvv 240 +Ea++Vn vl+l +l+des+ ++ +rd+vL +++++P v+v AMDW01013172.1_FGP001 7 EEAVVVNDVLSLGTLMDESGVFDDpsPRDTVLGSIRDMRPAVFV 50 8******************98877779***************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03514 | 8.9E-5 | 7 | 50 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 53 aa Download sequence Send to blast |
VDPDPDEEAV VVNDVLSLGT LMDESGVFDD PSPRDTVLGS IRDMRPAVFV QAV |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AMDW01013172.1_FGP001 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012619 | 1e-78 | CP012619.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 11 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025877156.1 | 8e-24 | scarecrow-like protein 14 | ||||
TrEMBL | A0A0E0F9B6 | 1e-25 | A0A0E0F9B6_9ORYZ; Uncharacterized protein | ||||
STRING | OMERI12G00800.1 | 1e-26 | (Oryza meridionalis) |