PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AMDW01007179.1_FGP001

Organism

Oryza longistaminata

Taxonomic ID

4528

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

BES1

Protein Properties

Length: 47aa MW: 5118.74 Da PI: 4.5446

Description

BES1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AMDW01007179.1_FGP001	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF822	65.8	1.7e-20	1	44	37	80
DUF822 37 GnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpleeae 80 Gny+l++raD+neV++AL+reAGwvv +DGtt++ s+p+ +++ AMDW01007179.1_FGP001 1 GNYNLRVRADINEVIAALAREAGWVVLPDGTTFPSVSQPPPTQQ 44 9*********************************9999995554 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05687	4.7E-19	1	44	IPR008540	BES1/BZR1 plant transcription factor, N-terminal

Sequence ? help Back to Top
Protein Sequence Length: 47 aa Download sequence Send to blast
GNYNLRVRAD INEVIAALAR EAGWVVLPDG TTFPSVSQPP PTQQQLQ

Cis-element ? help Back to Top
Source	Link
PlantRegMap	AMDW01007179.1_FGP001

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP005546	6e-49	AP005546.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, BAC clone:OJ1003_C09.
GenBank	AP014965	6e-49	AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence.
GenBank	CP012617	6e-49	CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011023346.1	2e-18	PREDICTED: beta-amylase 7 isoform X4
Refseq	XP_020589209.1	1e-18	beta-amylase 7-like
Swissprot	O80831	9e-18	BAM7_ARATH; Beta-amylase 7
TrEMBL	A0A2K3NGE5	4e-17	A0A2K3NGE5_TRIPR; Beta-amylase 7-like protein (Fragment)
STRING	OPUNC09G18510.2	1e-17	(Oryza punctata)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45880.1	7e-20	beta-amylase 7

Publications ? help Back to Top
Soyk S, et al. The Enzyme-Like Domain of Arabidopsis Nuclear β-Amylases Is Critical for DNA Sequence Recognition and Transcriptional Activation. Plant Cell, 2014. 26(4): p. 1746-1763 [PMID:24748042]