PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OGLUM12G20170.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | LSD | ||||||||
Protein Properties | Length: 173aa MW: 18257.3 Da PI: 8.5475 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 43.5 | 5.3e-14 | 7 | 31 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C+gCr++L YPrGApsV+Ca+C++V OGLUM12G20170.1 7 CHGCRNILLYPRGAPSVCCAVCHAV 31 ************************9 PP | |||||||
2 | zf-LSD1 | 48.4 | 1.5e-15 | 47 | 71 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggCrtlL+Y+r+A+sVRC++CdtV OGLUM12G20170.1 47 CGGCRTLLMYTRNATSVRCSCCDTV 71 ************************9 PP | |||||||
3 | zf-LSD1 | 50.9 | 2.5e-16 | 85 | 109 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+C+t+L+YP+GApsV+Ca+C+++ OGLUM12G20170.1 85 CGQCQTVLMYPYGAPSVKCAICNFI 109 ***********************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
TIGRFAMs | TIGR01053 | 2.9E-12 | 4 | 31 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 3.8E-11 | 7 | 31 | IPR005735 | Zinc finger, LSD1-type |
TIGRFAMs | TIGR01053 | 1.3E-15 | 44 | 74 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 1.9E-12 | 47 | 71 | IPR005735 | Zinc finger, LSD1-type |
TIGRFAMs | TIGR01053 | 3.4E-11 | 82 | 110 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 2.2E-14 | 85 | 109 | IPR005735 | Zinc finger, LSD1-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000303 | Biological Process | response to superoxide | ||||
GO:0001666 | Biological Process | response to hypoxia | ||||
GO:0002240 | Biological Process | response to molecule of oomycetes origin | ||||
GO:0009626 | Biological Process | plant-type hypersensitive response | ||||
GO:0009862 | Biological Process | systemic acquired resistance, salicylic acid mediated signaling pathway | ||||
GO:0010104 | Biological Process | regulation of ethylene-activated signaling pathway | ||||
GO:0010310 | Biological Process | regulation of hydrogen peroxide metabolic process | ||||
GO:0010602 | Biological Process | regulation of 1-aminocyclopropane-1-carboxylate metabolic process | ||||
GO:0010618 | Biological Process | aerenchyma formation | ||||
GO:0043069 | Biological Process | negative regulation of programmed cell death |
Sequence ? help Back to Top |
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Protein Sequence Length: 173 aa Download sequence Send to blast |
MQSQIVCHGC RNILLYPRGA PSVCCAVCHA VSSTAPSPGM DIAHLICGGC RTLLMYTRNA 60 TSVRCSCCDT VNLVRPVSSI AHLNCGQCQT VLMYPYGAPS VKCAICNFIT NTGMNTMRHL 120 PPNGTSYTVP STSAPTIQSQ NVTVVVENPM TVDAKGKLVS NVVVGVTTGG KKY |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK111837 | 0.0 | AK111837.1 Oryza sativa Japonica Group cDNA clone:J023139G05, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015620418.1 | 1e-120 | protein LOL2 | ||||
Swissprot | Q2QMB3 | 1e-121 | LOL2_ORYSJ; Protein LOL2 | ||||
TrEMBL | A0A0E0BV27 | 1e-121 | A0A0E0BV27_9ORYZ; Uncharacterized protein | ||||
STRING | OGLUM12G20170.1 | 1e-122 | (Oryza glumipatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1347 | 38 | 124 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G20380.7 | 2e-51 | LSD family protein |
Publications ? help Back to Top | |||
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