PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM12G19660.2
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bZIP
Protein Properties Length: 299aa    MW: 32069.5 Da    PI: 6.5318
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM12G19660.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_152.41.2e-16113168459
                      XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevakl 59 
                       kr+rr+ +NRe+ArrsR+RK+a +  Le  v +L +eN +L+k+l+ +++++++ 
  OGLUM12G19660.2 113 AKRTRRMLSNRESARRSRKRKQAHLNDLESQVSQLRSENASLQKRLSDMTQKYKQS 168
                      69*****************************************7777777776654 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003382.2E-18106174IPR004827Basic-leucine zipper domain
PROSITE profilePS5021712.047112175IPR004827Basic-leucine zipper domain
PfamPF001707.2E-14113167IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.83E-12114166No hitNo description
Gene3DG3DSA:1.20.5.1708.4E-14114167No hitNo description
CDDcd147022.06E-18115165No hitNo description
PROSITE patternPS000360117132IPR004827Basic-leucine zipper domain
PfamPF124983.7E-17181277IPR020983Basic leucine-zipper, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MKRGGAGVGG GGGDPGAYAA VLKTKLDLYC AAVAKSMEAK PQESSLGYLN LQASDTSQLA  60
SQASFNGYGS TRVTNSNAIH EDYDQGKPAN SGTSKEQSDD DGDLEEDTDP VNAKRTRRML  120
SNRESARRSR KRKQAHLNDL ESQVSQLRSE NASLQKRLSD MTQKYKQSTT EYGNLQDDMN  180
AMRRKVNIAE EAVRRVTGIG LRLFTTSEMP ASSMPFSSGV SDAASAAAAA ALVEDDWTNC  240
SLPDEAIPVP SAAMALRSPS MRRVASLENL QKRIHAGDVT HFEAASALSL PEATACDNK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1126132RRSRKRK
2126133RRSRKRKQ
3128133SRKRKQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8376610.0CT837661.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN063K17, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015620821.10.0light-inducible protein CPRF2 isoform X2
TrEMBLA0A0E0BUX00.0A0A0E0BUX0_9ORYZ; Uncharacterized protein
STRINGOGLUM12G19660.30.0(Oryza glumipatula)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28770.21e-25bZIP family protein