PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM12G19470.2

Organism

Oryza glumaepatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

WRKY

Protein Properties

Length: 458aa MW: 48723.2 Da PI: 10.4597

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM12G19470.2	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	98.9	3.1e-31	392	449	3	59
-SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 D+y+WrKYGqK++kgs++pr+YY+C+s gCp++k+ver+ +dp ++++tYegeHnh+ OGLUM12G19470.2 392 DEYSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERCVDDPAMLIVTYEGEHNHT 449 9***********************988**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF10533	1.8E-18	343	388	IPR018872	Zn-cluster domain
Gene3D	G3DSA:2.20.25.80	1.1E-33	378	449	IPR003657	WRKY domain
PROSITE profile	PS50811	30.148	385	448	IPR003657	WRKY domain
SuperFamily	SSF118290	7.72E-27	388	449	IPR003657	WRKY domain
SMART	SM00774	4.4E-38	390	450	IPR003657	WRKY domain
Pfam	PF03106	7.1E-27	392	448	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0016021	Cellular Component	integral component of membrane
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0005516	Molecular Function	calmodulin binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 458 aa Download sequence Send to blast
MSRSPARRPA QVSELAELEL LLFFFFFFFF FSGDEFDAFL DGRPVAAMGR GAPLVVAAAT 60 MGRRSGRRNQ GRPPSEELRE SEASLAGLAP AAAAAAAMEE EVEAANRAAV ESCHRVLALL 120 SQQQDPALLR SIASETGEAC AKFRKVVSLL GNGGGGGGGG GGHARGRMAG RSRPSAVLRE 180 KGFLESSSGG GQLGMMMSGA ATPSTSSAAH LRNRIGGGGG VPPDSLRGLD LVSSSSKGGA 240 HQFDPPKLVQ PLSVQFQFGA TAHRYPFQQH QHQQKLQAEM FKRSNSGISL KFDSPSATGT 300 MSSAFMSSLS MDGSVASLEG KPPFHLISGP VASDPVNAHH APKRRCTGRG EDGSGKCATT 360 GRCHCSKRRK LRIKRSIKVP AISNKIADIP PDEYSWRKYG QKPIKGSPHP RGYYKCSSVR 420 GCPARKHVER CVDDPAMLIV TYEGEHNHTR LPTQSAQT

Sequence ? help Back to Top

Protein Sequence Length: 458 aa Download sequence Send to blast

MSRSPARRPA QVSELAELEL LLFFFFFFFF FSGDEFDAFL DGRPVAAMGR GAPLVVAAAT  60
MGRRSGRRNQ GRPPSEELRE SEASLAGLAP AAAAAAAMEE EVEAANRAAV ESCHRVLALL  120
SQQQDPALLR SIASETGEAC AKFRKVVSLL GNGGGGGGGG GGHARGRMAG RSRPSAVLRE  180
KGFLESSSGG GQLGMMMSGA ATPSTSSAAH LRNRIGGGGG VPPDSLRGLD LVSSSSKGGA  240
HQFDPPKLVQ PLSVQFQFGA TAHRYPFQQH QHQQKLQAEM FKRSNSGISL KFDSPSATGT  300
MSSAFMSSLS MDGSVASLEG KPPFHLISGP VASDPVNAHH APKRRCTGRG EDGSGKCATT  360
GRCHCSKRRK LRIKRSIKVP AISNKIADIP PDEYSWRKYG QKPIKGSPHP RGYYKCSSVR  420
GCPARKHVER CVDDPAMLIV TYEGEHNHTR LPTQSAQT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	1e-20	383	452	7	75	WRKY transcription factor 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK070648	0.0	AK070648.1 Oryza sativa Japonica Group cDNA clone:J023062B16, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015620342.1	0.0	protein WRKY1
Swissprot	Q32SG4	3e-89	WRKY1_MAIZE; Protein WRKY1
Swissprot	Q93WU6	1e-89	WRK74_ARATH; Probable WRKY transcription factor 74
TrEMBL	A0A0E0BUU6	0.0	A0A0E0BUU6_9ORYZ; Uncharacterized protein
STRING	OGLUM12G19470.2	0.0	(Oryza glumipatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2859	38	87

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30590.1	1e-71	WRKY DNA-binding protein 21

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]