PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM12G19470.1

Organism

Oryza glumaepatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

WRKY

Protein Properties

Length: 361aa MW: 38360.4 Da PI: 10.4666

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM12G19470.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	99.4	2.2e-31	295	352	3	59
-SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 D+y+WrKYGqK++kgs++pr+YY+C+s gCp++k+ver+ +dp ++++tYegeHnh+ OGLUM12G19470.1 295 DEYSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERCVDDPAMLIVTYEGEHNHT 352 9***********************988**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF10533	1.3E-18	246	291	IPR018872	Zn-cluster domain
Gene3D	G3DSA:2.20.25.80	7.3E-34	281	352	IPR003657	WRKY domain
PROSITE profile	PS50811	30.148	288	351	IPR003657	WRKY domain
SuperFamily	SSF118290	5.36E-27	291	352	IPR003657	WRKY domain
SMART	SM00774	4.4E-38	293	353	IPR003657	WRKY domain
Pfam	PF03106	5.0E-27	295	351	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0016021	Cellular Component	integral component of membrane
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0005516	Molecular Function	calmodulin binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 361 aa Download sequence Send to blast
MEEEVEAANR AAVESCHRVL ALLSQQQDPA LLRSIASETG EACAKFRKVV SLLGNGGGGG 60 GGGGGHARGR MAGRSRPSAV LREKGFLESS SGGGQLGMMM SGAATPSTSS AAHLRNRIGG 120 GGGVPPDSLR GLDLVSSSSK GGAHQFDPPK LVQPLSVQFQ FGATAHRYPF QQHQHQQKLQ 180 AEMFKRSNSG ISLKFDSPSA TGTMSSAFMS SLSMDGSVAS LEGKPPFHLI SGPVASDPVN 240 AHHAPKRRCT GRGEDGSGKC ATTGRCHCSK RRKLRIKRSI KVPAISNKIA DIPPDEYSWR 300 KYGQKPIKGS PHPRGYYKCS SVRGCPARKH VERCVDDPAM LIVTYEGEHN HTRLPTQSAQ 360 T

Sequence ? help Back to Top

Protein Sequence Length: 361 aa Download sequence Send to blast

MEEEVEAANR AAVESCHRVL ALLSQQQDPA LLRSIASETG EACAKFRKVV SLLGNGGGGG  60
GGGGGHARGR MAGRSRPSAV LREKGFLESS SGGGQLGMMM SGAATPSTSS AAHLRNRIGG  120
GGGVPPDSLR GLDLVSSSSK GGAHQFDPPK LVQPLSVQFQ FGATAHRYPF QQHQHQQKLQ  180
AEMFKRSNSG ISLKFDSPSA TGTMSSAFMS SLSMDGSVAS LEGKPPFHLI SGPVASDPVN  240
AHHAPKRRCT GRGEDGSGKC ATTGRCHCSK RRKLRIKRSI KVPAISNKIA DIPPDEYSWR  300
KYGQKPIKGS PHPRGYYKCS SVRGCPARKH VERCVDDPAM LIVTYEGEHN HTRLPTQSAQ  360
T

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	3e-20	281	355	2	75	WRKY transcription factor 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK070648	0.0	AK070648.1 Oryza sativa Japonica Group cDNA clone:J023062B16, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015620342.1	0.0	protein WRKY1
Swissprot	Q32SG4	2e-90	WRKY1_MAIZE; Protein WRKY1
Swissprot	Q93WU6	1e-90	WRK74_ARATH; Probable WRKY transcription factor 74
TrEMBL	A0A0E0BUU5	0.0	A0A0E0BUU5_9ORYZ; Uncharacterized protein
TrEMBL	A0A0E0BUU6	0.0	A0A0E0BUU6_9ORYZ; Uncharacterized protein
STRING	OGLUM12G19470.2	0.0	(Oryza glumipatula)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30590.1	2e-72	WRKY DNA-binding protein 21

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]