PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OGLUM12G18880.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | G2-like | ||||||||
Protein Properties | Length: 395aa MW: 41668.4 Da PI: 8.2378 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 101.5 | 5.5e-32 | 246 | 301 | 1 | 56 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k+r++W+peLH+rFv a+++LGG++ AtPk+i+elmkv+gLt+++vkSHLQkYRl+ OGLUM12G18880.1 246 KARRCWSPELHRRFVTALQRLGGPQAATPKQIRELMKVDGLTNDEVKSHLQKYRLH 301 68****************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.147 | 243 | 303 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.45E-17 | 244 | 304 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.8E-29 | 244 | 304 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.2E-26 | 246 | 301 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 3.6E-7 | 248 | 299 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 395 aa Download sequence Send to blast |
MGSSSASAAQ REEEAAAAAF VLGGVDMRML AARTATGALA RAGGGEAAAA AAAARFEDCI 60 RSLEAEKAKM EVFRRELPIS VHLIADVIEW LKDEVEKQRL LRRRQVEAPA AAPPPEMFAP 120 PATAKRKSAA SAAAEGVKAE ADANDKRSWM SSAQLWSCGS HTSTSTNNGG SVKKQQHKVS 180 NAFMPLATLP AFAKSLEKAD AAVPDLSLSS RVAMADAPAC PAAPSTTSSA VTDVAVAQRQ 240 QAVQRKARRC WSPELHRRFV TALQRLGGPQ AATPKQIREL MKVDGLTNDE VKSHLQKYRL 300 HTRRASDSGG GGGDHQTVGG RLWPPPPEQY TTSQHSTSQS GSPQGPLQLT VSSNHAVSVT 360 AGDSCDGGEE EEEEDGKSGS YSWEMQNGAR ASSSS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 1e-14 | 246 | 299 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 1e-14 | 246 | 299 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 1e-14 | 246 | 299 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 1e-14 | 246 | 299 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 1e-14 | 246 | 299 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 1e-14 | 246 | 299 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 1e-14 | 246 | 299 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 1e-14 | 246 | 299 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012620 | 1e-155 | CP012620.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 12 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015618787.1 | 0.0 | transcription factor HHO6 | ||||
TrEMBL | A0A0E0BUM4 | 0.0 | A0A0E0BUM4_9ORYZ; Uncharacterized protein | ||||
STRING | OGLUM12G18880.1 | 0.0 | (Oryza glumipatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5582 | 33 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G03500.1 | 6e-30 | G2-like family protein |