PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM12G18880.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family G2-like
Protein Properties Length: 395aa    MW: 41668.4 Da    PI: 8.2378
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM12G18880.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like101.55.5e-32246301156
          G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                      k+r++W+peLH+rFv a+++LGG++ AtPk+i+elmkv+gLt+++vkSHLQkYRl+
  OGLUM12G18880.1 246 KARRCWSPELHRRFVTALQRLGGPQAATPKQIRELMKVDGLTNDEVKSHLQKYRLH 301
                      68****************************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.147243303IPR017930Myb domain
SuperFamilySSF466892.45E-17244304IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.8E-29244304IPR009057Homeodomain-like
TIGRFAMsTIGR015571.2E-26246301IPR006447Myb domain, plants
PfamPF002493.6E-7248299IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 395 aa     Download sequence    Send to blast
MGSSSASAAQ REEEAAAAAF VLGGVDMRML AARTATGALA RAGGGEAAAA AAAARFEDCI  60
RSLEAEKAKM EVFRRELPIS VHLIADVIEW LKDEVEKQRL LRRRQVEAPA AAPPPEMFAP  120
PATAKRKSAA SAAAEGVKAE ADANDKRSWM SSAQLWSCGS HTSTSTNNGG SVKKQQHKVS  180
NAFMPLATLP AFAKSLEKAD AAVPDLSLSS RVAMADAPAC PAAPSTTSSA VTDVAVAQRQ  240
QAVQRKARRC WSPELHRRFV TALQRLGGPQ AATPKQIREL MKVDGLTNDE VKSHLQKYRL  300
HTRRASDSGG GGGDHQTVGG RLWPPPPEQY TTSQHSTSQS GSPQGPLQLT VSSNHAVSVT  360
AGDSCDGGEE EEEEDGKSGS YSWEMQNGAR ASSSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A1e-14246299255Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B1e-14246299255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A1e-14246299255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C1e-14246299255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D1e-14246299255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F1e-14246299255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H1e-14246299255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J1e-14246299255Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126201e-155CP012620.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 12 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015618787.10.0transcription factor HHO6
TrEMBLA0A0E0BUM40.0A0A0E0BUM4_9ORYZ; Uncharacterized protein
STRINGOGLUM12G18880.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP55823353
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03500.16e-30G2-like family protein