PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM12G18120.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GRAS
Protein Properties Length: 738aa    MW: 81291 Da    PI: 4.9964
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM12G18120.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS360.81.9e-1103587301374
             GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 
                      l++lL++cA+av+++d + a++lL++++++a p+gd++qRla++f+e+L+ar+a+++s + ++l +++ts    ++ l+a++l+  +  + k+s
  OGLUM12G18120.1 358 LRTLLIHCAQAVATDDRRSATELLKQIKQHAKPTGDATQRLAHCFAEGLQARIAGTGSLVHQSLVAKRTS---AVDILQAYQLYMAAICFKKVS 448
                      6789***************************************************999999999999998...9******************** PP

             GRAS  95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrl 186
                      ++  Nq+I++a  g++++Hi+D++i++G+QWp++l+ +++R++gpp++R+Tg++ p++g   +e++eetg+rL+k+A+e+gvpf++n+++a ++
  OGLUM12G18120.1 449 FIFSNQTIYNASLGKKKIHIVDYGIQYGFQWPCFLRRISQREGGPPEVRMTGIDLPQPGfrPTERIEETGHRLSKYAQEFGVPFKYNAIAAVKM 542
                      **********************************************************9*****************************9999** PP

             GRAS 187 edleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklprese 280
                      e+++ e+L+++p+E+l+Vn+++q ++l+desv ++s+rd vL+ +++++P+v++++  + + +++ F++rf eal +ysalfd l+a+ prese
  OGLUM12G18120.1 543 ESVRKEDLNIDPDEVLIVNCQYQFKNLMDESVVIDSPRDIVLSNIRKMQPHVFIHAIVNGSFSAPFFVTRFREALFFYSALFDVLDATTPRESE 636
                      ********************************************************************************************** PP

             GRAS 281 erikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                      +r  +E+ ++gr++ nv+aceg +r+er et+++W+ r ++aGFk++pl+ ++++ ++  ++ ++ + + ++ ++++l++gWk+r L+s+S W+
  OGLUM12G18120.1 637 QRLLIEQNIFGRAALNVIACEGIDRVERPETYKQWQVRNQRAGFKQLPLNPEIVQVVRNKVKDCYHKDFVIDIDHQWLLQGWKGRILYSISTWT 730
                      *****************************************************************889*************************5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098563.666332710IPR005202Transcription factor GRAS
PfamPF035146.6E-108358730IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 738 aa     Download sequence    Send to blast
MGSSAADSFP AGGDDAIRNV YGIGDGGEED DPSLFLYLSD LAPVSPSAYL DLPPSPPPPT  60
TTATTMVKEG EEAPEDLVLP FISRMLMEED IDDKFFYDYP DNPALLQAQQ PFLEILSDPS  120
SNSRSSNSDD PRLSPTSSSD TSAAINSYDA AATAPAVAAA VAAVPQYESI ELDPAAFFAA  180
ANSDLMSSAF LKGMEEANKF LPTENKLVID LEASSENNYL RGVEEAKRFL PSDDKLQVGF  240
AAAAAPVVSV KKEAVDVVVA ACGGGGGRGR KNPYDDEELE LEGGRSSKQT AVQGDDVAAR  300
AMFDKVMMPS HENCTEMMEK LRIAMKEEAA KKEASAGGKG GNGKVKGGQR GGRNVVDLRT  360
LLIHCAQAVA TDDRRSATEL LKQIKQHAKP TGDATQRLAH CFAEGLQARI AGTGSLVHQS  420
LVAKRTSAVD ILQAYQLYMA AICFKKVSFI FSNQTIYNAS LGKKKIHIVD YGIQYGFQWP  480
CFLRRISQRE GGPPEVRMTG IDLPQPGFRP TERIEETGHR LSKYAQEFGV PFKYNAIAAV  540
KMESVRKEDL NIDPDEVLIV NCQYQFKNLM DESVVIDSPR DIVLSNIRKM QPHVFIHAIV  600
NGSFSAPFFV TRFREALFFY SALFDVLDAT TPRESEQRLL IEQNIFGRAA LNVIACEGID  660
RVERPETYKQ WQVRNQRAGF KQLPLNPEIV QVVRNKVKDC YHKDFVIDID HQWLLQGWKG  720
RILYSISTWT PNDALSYF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A4e-443627298374GRAS family transcription factor containing protein, expressed
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1115220.0AK111522.1 Oryza sativa Japonica Group cDNA clone:J013002M11, full insert sequence.
GenBankAL7724250.0AL772425.7 Oryza sativa chromosome 12, . BAC OJ1396_C02 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
GenBankAL8448780.0AL844878.4 Oryza sativa chromosome 12, . BAC OSJNBb0036A19 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
GenBankAP0149680.0AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015620149.10.0scarecrow-like protein 34
TrEMBLA0A0E0BUD20.0A0A0E0BUD2_9ORYZ; Uncharacterized protein
STRINGOGLUM12G18120.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23131297
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37650.11e-161GRAS family protein