PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OGLUM12G17720.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | MYB_related | ||||||||
Protein Properties | Length: 211aa MW: 23896.2 Da PI: 8.2755 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 55 | 1.8e-17 | 32 | 77 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rgr+++ E+ l++++++++G++ W++Iar+++ gRt++++k++w++++ OGLUM12G17720.1 32 RGRMSPHEERLILELHARWGNR-WSRIARRLP-GRTDNEIKNYWRTHM 77 89********************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.34E-21 | 12 | 83 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.2E-9 | 12 | 39 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 4.426 | 12 | 26 | IPR017877 | Myb-like domain |
PROSITE profile | PS51294 | 25.552 | 27 | 81 | IPR017930 | Myb domain |
SMART | SM00717 | 2.2E-16 | 31 | 79 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.5E-15 | 32 | 76 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 7.54E-13 | 34 | 77 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 7.9E-20 | 40 | 78 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 211 aa Download sequence Send to blast |
MDRAGGPATG LNRTGKSCRL RWVNYLHPGL KRGRMSPHEE RLILELHARW GNRWSRIARR 60 LPGRTDNEIK NYWRTHMRKK AQERKSNMSP SSSSSSLTYQ SCHPETPSMI IGIEEQELHG 120 GSGCITSIMK STPVDMDGYP MDQIWMEIEA PNVLPGPCFD EAKDSASNSL SGPLLPYPMW 180 DYYCPETCLR MDDEIKVAPQ FGYGKGVGPC Y |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 3e-18 | 13 | 81 | 37 | 105 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CT833282 | 0.0 | CT833282.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA120H14, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015620228.1 | 1e-157 | myb-related protein MYBAS2 isoform X1 | ||||
Swissprot | Q4JL76 | 1e-152 | MYBA2_ORYSJ; Myb-related protein MYBAS2 | ||||
TrEMBL | A0A0D3HVU1 | 1e-156 | A0A0D3HVU1_9ORYZ; Uncharacterized protein | ||||
TrEMBL | A0A0E0BU75 | 1e-156 | A0A0E0BU75_9ORYZ; Uncharacterized protein | ||||
STRING | OGLUM12G17720.1 | 1e-157 | (Oryza glumipatula) | ||||
STRING | OBART12G16130.1 | 1e-157 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP636 | 37 | 169 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G46130.3 | 8e-51 | myb domain protein 48 |
Publications ? help Back to Top | |||
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