PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM12G14890.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 511aa    MW: 54481.3 Da    PI: 7.1787
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM12G14890.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY100.59.9e-32241297259
                      --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                      dDgynWrKYGqK+vkgs++prsYY+Ct+++Cpvkkkve+++ d+++ ei+Y+g+Hnh+
  OGLUM12G14890.1 241 DDGYNWRKYGQKVVKGSDCPRSYYKCTHPNCPVKKKVEHAE-DGQISEIIYKGKHNHQ 297
                      8**************************************99.***************8 PP
2WRKY107.19e-34397455159
                      ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                      ldDgy+WrKYGqK+vkg+++prsYY+Ct+agC+v+k++er+++dpk+v++tYeg+Hnhe
  OGLUM12G14890.1 397 LDDGYRWRKYGQKVVKGNPHPRSYYKCTYAGCNVRKHIERASSDPKAVITTYEGKHNHE 455
                      59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.6E-28237299IPR003657WRKY domain
SuperFamilySSF1182902.62E-25239299IPR003657WRKY domain
SMARTSM007742.5E-34240298IPR003657WRKY domain
PfamPF031061.5E-24241297IPR003657WRKY domain
PROSITE profilePS5081123.192241299IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.1E-36383457IPR003657WRKY domain
SuperFamilySSF1182902.48E-29389457IPR003657WRKY domain
PROSITE profilePS5081137.413392457IPR003657WRKY domain
SMARTSM007741.1E-39397456IPR003657WRKY domain
PfamPF031063.9E-26398455IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 511 aa     Download sequence    Send to blast
MSARPPPPPR PRLALPPRSA AESLFTGAGD ASPGPLTLAS ALFPSDPDGG GGVMTSSSSS  60
AAGATSFTQL LIGNLSAPPP PPPQQQQQRE AARGGGVARA GPALSVAPPA AAGSVFTVPP  120
GLSPSGLLDS PGLLFSPAML DIYFVKTSPE GGFGMSHREA LAQVTAQASH SPLRMFDHTE  180
QPSFSAAPTS SEAMQHMNAA VNMTGISDMV MGPTNNENVA FQPAEASQRY QVNAPVDKPA  240
DDGYNWRKYG QKVVKGSDCP RSYYKCTHPN CPVKKKVEHA EDGQISEIIY KGKHNHQRPP  300
NKRAKDGSSS AADQNEQSND TTSGLSGIKR DQEAIYGMSE QLSGLSEGDD MDDGESRPHE  360
ADDKESDSKK RNIQISSQRT SAEAKIIVQT TSEVDLLDDG YRWRKYGQKV VKGNPHPRSY  420
YKCTYAGCNV RKHIERASSD PKAVITTYEG KHNHEPPVGR GSNQNAGNAA PSSSAQQNMQ  480
NLSSNQASLT MADFNNINQR PIGVLQFKSE E
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-38231457877Probable WRKY transcription factor 4
2lex_A1e-38231457877Probable WRKY transcription factor 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00260DAPTransfer from AT2G03340Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL7317590.0AL731759.2 Oryza sativa chromosome 12, . BAC OSJNBa0009K11 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
GenBankAP0149680.0AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015620542.10.0probable WRKY transcription factor 3
TrEMBLA0A0E0BT580.0A0A0E0BT58_9ORYZ; Uncharacterized protein
STRINGOGLUM12G14890.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP134538122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03340.11e-107WRKY DNA-binding protein 3