PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OGLUM12G09810.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | C3H | ||||||||
Protein Properties | Length: 527aa MW: 57078.9 Da PI: 6.5588 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 27.2 | 6.6e-09 | 108 | 133 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ++++ C ++ ++G C++G +CkF+H+ OGLUM12G09810.1 108 PGEPDCTYYVKFGSCRFGMKCKFNHP 133 5789*********************8 PP | |||||||
2 | zf-CCCH | 25.9 | 1.8e-08 | 238 | 260 | 3 | 25 |
S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 3 telCrffartGtCkyGdrCkFaH 25 +e+C++++ G Ck+G Ck+ H OGLUM12G09810.1 238 QEECKYYSTPGGCKFGKACKYLH 260 699******************** PP | |||||||
3 | zf-CCCH | 34.6 | 3.3e-11 | 285 | 309 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++++C++++rtG Cky +CkF+H+ OGLUM12G09810.1 285 GEKECPYYMRTGSCKYATNCKFHHP 309 7899********************9 PP | |||||||
4 | zf-CCCH | 19.9 | 1.3e-06 | 432 | 458 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C++f ++G+Ck+ +Ck++H++ OGLUM12G09810.1 432 PGQPECQHFVKSGFCKFRMKCKYHHPR 458 5789*********************96 PP | |||||||
5 | zf-CCCH | 23.7 | 8.3e-08 | 477 | 502 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++ C ++ r+G Ck+G+ C ++H++ OGLUM12G09810.1 477 DQPVCTYYGRYGVCKFGPACAYNHPF 502 6899********************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 14.258 | 107 | 135 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0013 | 107 | 134 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.4E-6 | 109 | 133 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.103 | 235 | 263 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 5.3E-4 | 236 | 262 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 5.5E-6 | 238 | 260 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.1E-4 | 241 | 261 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.793 | 283 | 311 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.0E-5 | 283 | 310 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 5.7E-8 | 285 | 309 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 6.15E-6 | 286 | 310 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.4E-4 | 289 | 308 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.028 | 431 | 458 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.676 | 431 | 459 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0081 | 475 | 502 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.732 | 475 | 503 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 5.49E-5 | 476 | 503 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.5E-5 | 477 | 502 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 527 aa Download sequence Send to blast |
MADADARAPP KSDPGATPIG SISPSSAAPA AGEDEVEVEV EVEEQLAGLA IADQGEELLL 60 PKPTGWEDGP VVAGDEVSGG EKLPGEVAAA VGVEGAAADS RPRFPRRPGE PDCTYYVKFG 120 SCRFGMKCKF NHPARKKKSR VKGSNGGSGS GGSNSSSNKA SSPDDEQAPK EEYGSYVPDI 180 SPEVDSLGFA DKGSASNLEN FKKYSYEIID VKKGRVEPKE LKVAKEKRKE FISEGSSQEE 240 CKYYSTPGGC KFGKACKYLH RDGKEGKTDA EKVDLNFLGL PLRPGEKECP YYMRTGSCKY 300 ATNCKFHHPD PSNVASKDPQ LEHENGDAPQ QDVQGSSSQP NASIWPDQRT VNEHHVPFIA 360 PSPSYSAGML PPQGMYPPPE WNGYHQVPLN PYYPPGVPFQ HFPAAPINHP MYKAPEIPGH 420 QQVPSEEYPE RPGQPECQHF VKSGFCKFRM KCKYHHPRSP VPPAGALSPL GLPIKPDQPV 480 CTYYGRYGVC KFGPACAYNH PFNFSPVPAA GPPLLPAQYP TPGNYTL |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK111498 | 0.0 | AK111498.1 Oryza sativa Japonica Group cDNA clone:J013000H23, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015620303.1 | 0.0 | zinc finger CCCH domain-containing protein 65 isoform X4 | ||||
Swissprot | Q2QTY2 | 0.0 | C3H65_ORYSJ; Zinc finger CCCH domain-containing protein 65 | ||||
TrEMBL | A0A0E0BRB0 | 0.0 | A0A0E0BRB0_9ORYZ; Uncharacterized protein | ||||
STRING | OGLUM12G09810.1 | 0.0 | (Oryza glumipatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7928 | 35 | 48 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G48440.1 | 2e-58 | C3H family protein |
Publications ? help Back to Top | |||
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