PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM12G07180.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ZF-HD
Protein Properties Length: 354aa    MW: 37595.3 Da    PI: 8.65
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM12G07180.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer98.16.4e-3174128358
      ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 
                      ++rY+eClkNhAa++Gg a+DGCgEfmp  geeg+ +al+C+ACgCHRnFHR+e +
  OGLUM12G07180.1  74 AARYRECLKNHAAAIGGSATDGCGEFMPG-GEEGSLDALRCSACGCHRNFHRKELD 128
                      689*************************9.999********************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047709.7E-2875126IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257743.0E-2276128IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015661.6E-2976126IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.52477126IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.605.7E-30183258IPR009057Homeodomain-like
SuperFamilySSF466895.1E-19186257IPR009057Homeodomain-like
TIGRFAMsTIGR015651.4E-26196252IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MDLSGAQGEL PLPMHAAASP YLGLHHDHHH HHGGGGGGGG GGGMNGRHMS PPTPPAAAEE  60
SKAVVVVSSS ATAAARYREC LKNHAAAIGG SATDGCGEFM PGGEEGSLDA LRCSACGCHR  120
NFHRKELDAA AAPPLHHHHH QLLGVGAHPR GHGHHHHHLL VAALPPPTRM VMPLSAMHTS  180
ESDDAAARPG GGAAARKRFR TKFTAEQKAR MLGFAEEVGW RLQKLEDAVV QRFCQEVGVK  240
RRVLKVWMHN NKHTLARRHL HPSSAAAGDD DDGAPPPHPD PGGASSPPPP HHLRLHELIG  300
DHYGSGAPEE LKKLDFFWER RGGGGGNPLR NKMKIHLASA STSIRLQLSP TETL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh5_A2e-241962541775ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL9548530.0AL954853.5 Oryza sativa chromosome 12, . BAC OSJNBb0071I17 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
GenBankAP0149680.0AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015618832.11e-112zinc-finger homeodomain protein 3
SwissprotQ2QW441e-113ZHD3_ORYSJ; Zinc-finger homeodomain protein 3
TrEMBLA0A0E0BQD10.0A0A0E0BQD1_9ORYZ; Uncharacterized protein
STRINGOGLUM12G07180.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP81535145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14440.25e-48homeobox protein 31