PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OGLUM12G06360.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 129aa MW: 13813.1 Da PI: 9.7917 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 33.2 | 6.5e-11 | 73 | 98 | 18 | 43 |
HHHHHHHHHHHHHHT-EEEEEEE-TT CS SRF-TF 18 ngilKKAeELSvLCdaevaviifsst 43 ng+lKKA+ELSvL daev iifs++ OGLUM12G06360.1 73 NGLLKKAYELSVLYDAEVTPIIFSNR 98 8***********************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PRINTS | PR00404 | 1.7E-6 | 70 | 85 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.9E-8 | 73 | 97 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 7.59E-9 | 73 | 115 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 11.311 | 73 | 108 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.7E-6 | 85 | 106 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 129 aa Download sequence Send to blast |
MTSPCSKSPW LPQLLPPATL PRQAQHAPWQ VRKPLVAPGK HRRPTPAACL ETVVLFDGPW 60 CAGTFAAAGN GVNGLLKKAY ELSVLYDAEV TPIIFSNRAM ASAMTNSESS NIITMVLREA 120 ATMVPKVSA |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK288119 | 3e-50 | AK288119.1 Oryza sativa Japonica Group cDNA, clone: J080051I03, full insert sequence. | |||
GenBank | AP003235 | 3e-50 | AP003235.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0039A07. | |||
GenBank | AP003279 | 3e-50 | AP003279.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0529E05. | |||
GenBank | AP003286 | 3e-50 | AP003286.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0677H08. | |||
GenBank | AP014957 | 3e-50 | AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012614 | 3e-50 | CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A0E0BQ25 | 1e-89 | A0A0E0BQ25_9ORYZ; Uncharacterized protein | ||||
STRING | OGLUM12G06360.1 | 2e-90 | (Oryza glumipatula) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G15800.2 | 8e-09 | MIKC_MADS family protein |