PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM12G04880.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 347aa    MW: 35582.2 Da    PI: 5.2459
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM12G04880.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.59.5e-20163212255
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                      +y+GVr+++ +g+W+AeIrdp     +  +r++lg+f+tae+Aa+a++ a+++++g
  OGLUM12G04880.1 163 RYRGVRQRP-WGKWAAEIRDP-----HkaARVWLGTFDTAEDAARAYDGAALRFRG 212
                      8********.**********7.....337************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.09E-30162222No hitNo description
SMARTSM003801.1E-36163226IPR001471AP2/ERF domain
PfamPF008473.9E-13163212IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.3E-33163221IPR001471AP2/ERF domain
PROSITE profilePS5103225.462163220IPR001471AP2/ERF domain
SuperFamilySSF541711.96E-22163221IPR016177DNA-binding domain
PRINTSPR003674.9E-12164175IPR001471AP2/ERF domain
PRINTSPR003674.9E-12186202IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MCCTVDEVAD RGEQRRQHRR PLDADAGGDE AAVATTSSSL LAAPMLSRRR QAEEMAAMVS  60
ALASVVAGGG GGTSLPAKRP AEREPEDGAA VEGVWWSYRS ELAAAAAAPS PPAAAAAPFP  120
AGYVPSPGQH SPASAAAAAD EEELPSPSSA DSGGGGGGAA RKRYRGVRQR PWGKWAAEIR  180
DPHKAARVWL GTFDTAEDAA RAYDGAALRF RGSRAKLNFP EHATLPPPPP PAAHRCPPPP  240
RPDALLESQD LSPGAGGGDP YSQYARFLQG SGGDGGEPAA LPGGGASQRT PPATTLLYSF  300
GGEAASAAYL WQPESGGGGG MGWPATSPAA WSEYGLYPPP ERRDTDT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A8e-24162220463ATERF1
3gcc_A8e-24162220463ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1159165ARKRYRG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1071250.0AK107125.1 Oryza sativa Japonica Group cDNA clone:002-124-B10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015619856.10.0ethylene-responsive transcription factor ERF110
TrEMBLA0A0E0BPI70.0A0A0E0BPI7_9ORYZ; Uncharacterized protein
STRINGOGLUM12G04880.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP98942540
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G43160.13e-25related to AP2 6