PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM12G02750.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GRAS
Protein Properties Length: 554aa    MW: 60838.8 Da    PI: 5.1852
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM12G02750.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS330.14.3e-1011675461373
             GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 
                      l+elL++cA+av+sg+ + a +lL++++ ++sp+gd+++Rla+yf+ +L+arla+   +l + l +s++++ +  e l a+++f  ++ +  ++
  OGLUM12G02750.1 167 LRELLMSCAQAVASGNRRSAGELLEQIKRHSSPTGDATERLAHYFADGLEARLAG-AASLEHRLLASAEERASAMELLEAYQVFMAACCFKWVA 259
                      689***************************************************9.88999999999999999********************* PP

             GRAS  95 hltaNqaIleavegeervHiiDfdis.qGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakr 185
                      +  aN aIl+a+eg ++vHi+D++ + +GlQWp+Llq La+R++gpp++R+T vg+p++g   +++le+tg+rL++ A+++g+pf+f++++a r
  OGLUM12G02750.1 260 FTFANMAILRAAEGRSKVHIVDYGGQyHGLQWPSLLQRLAEREGGPPEVRMTLVGHPQPGfrPARRLERTGRRLSNCARAFGLPFKFRAVAAAR 353
                      ***********************86538*************************************************************9999* PP

             GRAS 186 ledleleeL.rvkpgE.alaVnlvlqlhrlldesvsles..erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleakl 275
                      +e+++ e+   v+p+E a++Vn vl+l +l+des+  ++  +rd+vL  +++++P v+v +  +  h+++ F +rf eal ++salfd+l+a+ 
  OGLUM12G02750.1 354 WETVTAEDVvGVDPDEaAVVVNDVLSLGTLMDESGVFDDpsPRDTVLGSIRDMRPAVFVQAVVNGAHGAPFFPTRFREALFFFSALFDMLDATT 447
                      *****9997589997736999*************98877779************************************************9998 PP

             GRAS 276 pres.eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLv 368
                      p+e  + r+++Er +l+r++v v+a egaer+er et+++W++r ++aG+++v+++ ++++ +++ +r+ + +++ +ee+ g+l++gWk+r L+
  OGLUM12G02750.1 448 PEEGsHLRAVLERDVLRRAVVGVIAGEGAERVERPETYRRWQARNRRAGLRQVAVEADVVEAVRRRVRRRHHEEFVIEEDAGWLLQGWKGRILY 541
                      8876599****************************************************************999******************** PP

             GRAS 369 svSaW 373
                      + SaW
  OGLUM12G02750.1 542 AHSAW 546
                      ***** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098556.025141527IPR005202Transcription factor GRAS
PfamPF035141.5E-98167546IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 554 aa     Download sequence    Send to blast
MGPAAPPSEA AAAADDVVLP YISRILMEED IDDMFFCLYP DHPALLEAQQ PFAQILLSSS  60
SGIAGELNSA PMEDSAALMM QGSGDGRGRM GSKHGGDELE AEVGRASKLM ATPEEEDDDD  120
DGVGEMLEKM MLNGDEEMNA PRVPAEKNGG KAARRKRRQG KGEVVDLREL LMSCAQAVAS  180
GNRRSAGELL EQIKRHSSPT GDATERLAHY FADGLEARLA GAASLEHRLL ASAEERASAM  240
ELLEAYQVFM AACCFKWVAF TFANMAILRA AEGRSKVHIV DYGGQYHGLQ WPSLLQRLAE  300
REGGPPEVRM TLVGHPQPGF RPARRLERTG RRLSNCARAF GLPFKFRAVA AARWETVTAE  360
DVVGVDPDEA AVVVNDVLSL GTLMDESGVF DDPSPRDTVL GSIRDMRPAV FVQAVVNGAH  420
GAPFFPTRFR EALFFFSALF DMLDATTPEE GSHLRAVLER DVLRRAVVGV IAGEGAERVE  480
RPETYRRWQA RNRRAGLRQV AVEADVVEAV RRRVRRRHHE EFVIEEDAGW LLQGWKGRIL  540
YAHSAWVVAE DGAH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A2e-3817454725378Protein SCARECROW
5b3h_D2e-3817454725378Protein SCARECROW
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0149680.0AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence.
GenBankBX0005020.0BX000502.2 Oryza sativa chromosome 12, . BAC OSJNBb0041E01 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
GenBankBX0005040.0BX000504.2 Oryza sativa chromosome 12, . BAC OJ1239_F07 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015619736.10.0scarecrow-like protein 30
TrEMBLA0A0E0BNN20.0A0A0E0BNN2_9ORYZ; Uncharacterized protein
STRINGOGLUM12G02750.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP160181014
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.11e-105SCARECROW-like 14