PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM12G01020.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GRAS
Protein Properties Length: 218aa    MW: 23871 Da    PI: 5.6487
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM12G01020.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS217.28.2e-672211156374
             GRAS 156 eeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhn 249
                      e+le+tg+rL++fA++lg+pfef + va++  +l++e+L v ++Ea+aV++    h+l+d ++s ++    +L+l+++l Pkvv++veq+++h 
  OGLUM12G01020.1   2 EALEATGKRLSDFADTLGLPFEFCP-VADKAGNLDPEKLGVTRREAVAVHWLR--HSLYDVTGSDSN----TLWLIQRLAPKVVTMVEQDLSH- 87 
                      689**********************.7************************99..999999999999....**********************. PP

             GRAS 250 sesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrk 343
                      s+sFl+rf+ea++yysalfdsl+a+++++s er++vE++ll+rei+nv+a  g +r+ + + +++Wre+l ++GF+  +l  +aa+qa lll +
  OGLUM12G01020.1  88 SGSFLARFVEAIHYYSALFDSLDASYSEDSPERHVVEQQLLSREIRNVLAVGGPARTGDVK-FGSWREKLAQSGFRVSSLAGSAAAQATLLLGM 180
                      899****************************************************999987.******************************** PP

             GRAS 344 vksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                      ++sdgy++ ee+g+l lgWkd  L+++SaWr
  OGLUM12G01020.1 181 FPSDGYTLIEENGALKLGWKDLCLLTASAWR 211
                      ******************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098529.611191IPR005202Transcription factor GRAS
PfamPF035142.8E-642211IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MEALEATGKR LSDFADTLGL PFEFCPVADK AGNLDPEKLG VTRREAVAVH WLRHSLYDVT  60
GSDSNTLWLI QRLAPKVVTM VEQDLSHSGS FLARFVEAIH YYSALFDSLD ASYSEDSPER  120
HVVEQQLLSR EIRNVLAVGG PARTGDVKFG SWREKLAQSG FRVSSLAGSA AAQATLLLGM  180
FPSDGYTLIE ENGALKLGWK DLCLLTASAW RPIQASGR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-1261212169380Protein SCARECROW
5b3h_A1e-1261212168379Protein SCARECROW
5b3h_D1e-1261212168379Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor required for quiescent center cells specification and maintenance of surrounding stem cells, and for the asymmetric cell division involved in radial pattern formation in roots. Essential for cell division but not differentiation of the ground tissue. Regulates the radial organization of the shoot axial organs. Restricts SHR movment and sequesters it into the nucleus of the endodermis (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2431310.0AK243131.1 Oryza sativa Japonica Group cDNA, clone: J100030A12, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015615402.11e-155protein SCARECROW 1
RefseqXP_015620600.11e-155protein SCARECROW 2
SwissprotA2ZAX51e-157SCR1_ORYSI; Protein SCARECROW 1
TrEMBLA0A0E0BMX41e-158A0A0E0BMX4_9ORYZ; Uncharacterized protein
STRINGOGLUM12G01020.11e-159(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP137138122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54220.11e-125GRAS family protein