PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM11G14710.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ARF
Protein Properties Length: 851aa    MW: 93791.4 Da    PI: 6.7899
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM11G14710.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B374.81e-23147248199
                      EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                      f+k+lt sd++++g +++ +++a+e+      + + + +++l+ +d++g +W++++i+r++++r++l++GW+ Fv+a++L +gD ++F   + +
  OGLUM11G14710.1 147 FCKTLTASDTSTHGGFSVLRRHADEClppldmSRQ-PPTQELVAKDLHGVEWRFRHIFRGQPRRHLLQSGWSVFVSAKRLVAGDAFIFL--RGE 237
                      99*****************************7333.34459************************************************..449 PP

                      EE..EEEEE-S CS
               B3  89 efelvvkvfrk 99 
                      ++el+v+v+r+
  OGLUM11G14710.1 238 NGELRVGVRRA 248
                      999*****996 PP
2Auxin_resp116.32.6e-38273355183
       Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                      a+ha++t+++F+v+Y+Pr+s++eFvv++++++++lk+++s+GmRfkm+fe+e+++e+r++Gt+vg+ d+dp  Wp+SkWrsLk
  OGLUM11G14710.1 273 AWHAVNTGTMFTVYYKPRTSPAEFVVPYDRYMESLKRNYSIGMRFKMRFEGEEAPEQRFTGTIVGMGDSDPAGWPESKWRSLK 355
                      89*******************************************************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.2E-42140262IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.02E-41142276IPR015300DNA-binding pseudobarrel domain
CDDcd100177.24E-22145247No hitNo description
PfamPF023621.3E-21147248IPR003340B3 DNA binding domain
PROSITE profilePS5086311.899147249IPR003340B3 DNA binding domain
SMARTSM010199.9E-24147249IPR003340B3 DNA binding domain
PfamPF065071.2E-35273355IPR010525Auxin response factor
SuperFamilySSF542771.47E-11718799No hitNo description
PROSITE profilePS5174521.936723807IPR000270PB1 domain
PfamPF023092.3E-6769807IPR033389AUX/IAA domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 851 aa     Download sequence    Send to blast
MATAEVGGGG GEGDAAAAAV ARAGGGGGGG GGEDALFTEL WSACAGPLVT VPRVGEKVFY  60
FPQGHIEQVE ASTNQVGEQR MQLYNLPWKI LCEVMNVELK AEPDTDEVYA QLTLLPESKQ  120
QEDNGSTEEE VPSAPAAGHV RPRVHSFCKT LTASDTSTHG GFSVLRRHAD ECLPPLDMSR  180
QPPTQELVAK DLHGVEWRFR HIFRGQPRRH LLQSGWSVFV SAKRLVAGDA FIFLRGENGE  240
LRVGVRRAMR QQTNVPSSVI SSHSMHLGVL ATAWHAVNTG TMFTVYYKPR TSPAEFVVPY  300
DRYMESLKRN YSIGMRFKMR FEGEEAPEQR FTGTIVGMGD SDPAGWPESK WRSLKVRWDE  360
ASSIPRPERV SPWQIEPAVS PPPVNPLPVP RTKRLRPNAT ALPADSSAIA KEAATKVVVE  420
SEPNGTQRTF QTQENATPKS GFSNSSELES AQKSIMCPSG FDREKNNTPI QWKLGSDGRM  480
QMSKPESYSE MLSGFQPPKD VQTPQGFCSL PEQITAGHSN FWHTVNAQYQ DQQSNHNMFP  540
SSWSFMPPNT RLGLNKQNYS MIQEAGVLSQ RPGNTKFGNG VYAALPGRGT EKYSGGWFGH  600
MIPNSHMDDT QPRLIKPKPL VVAHGDVQKA KGASCKLFGI HLDSPAKSEP LKSPSSVVYD  660
GTPQTPGATE WCRPDVTEVE KCSDPSKAMK PLDTPQPDSV PEKPSSQQAS RNMSCKSQGV  720
STRSCKKVHK QGIALGRSVD LTKFNGYEEL IAELDDMFDF NGELKGPKKE WMVVYTDNEG  780
DMMLVGDDPW IEFCDMVHKI FIYTREEVQR MNPGTLNSRS EDSHANSMER GSVGREMRGC  840
LSTSSLNSEN C
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-177193772354Auxin response factor 1
4ldw_A1e-177193772354Auxin response factor 1
4ldw_B1e-177193772354Auxin response factor 1
4ldx_A1e-177193772354Auxin response factor 1
4ldx_B1e-177193772354Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin under light or dark conditions and gravitropic stimulation of coleptile. {ECO:0000269|PubMed:12369618, ECO:0000269|PubMed:17408882}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF1402280.0AF140228.2 Oryza sativa (indica cultivar-group) putative auxin response factor 1 mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015617186.10.0auxin response factor 23 isoform X1
RefseqXP_015617187.10.0auxin response factor 23 isoform X1
RefseqXP_015617188.10.0auxin response factor 23 isoform X2
SwissprotQ2R3F50.0ARFW_ORYSJ; Auxin response factor 23
TrEMBLA0A0E0BJL40.0A0A0E0BJL4_9ORYZ; Auxin response factor
STRINGOGLUM11G14710.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP117836111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62000.30.0auxin response factor 2
Publications ? help Back to Top
  1. Contreras I,Ortiz-Zapater E,Castilho LM,Aniento F
    Characterization of Cop I coat proteins in plant cells.
    Biochem. Biophys. Res. Commun., 2000. 273(1): p. 176-82
    [PMID:10873582]
  2. Kobayashi-Uehara A,Shimosaka E,Handa H
    Cloning and expression analyses of cDNA encoding an ADP-ribosylation factor from wheat: tissue-specific expression of wheat ARF.
    Plant Sci., 2001. 160(3): p. 535-542
    [PMID:11166441]
  3. Ren H, et al.
    Combinative effects of a bacterial type-III effector and a biocontrol bacterium on rice growth and disease resistance.
    J. Biosci., 2006. 31(5): p. 617-27
    [PMID:17301500]
  4. Song Y,You J,Xiong L
    Characterization of OsIAA1 gene, a member of rice Aux/IAA family involved in auxin and brassinosteroid hormone responses and plant morphogenesis.
    Plant Mol. Biol., 2009. 70(3): p. 297-309
    [PMID:19266169]
  5. Kitajima A, et al.
    The rice alpha-amylase glycoprotein is targeted from the Golgi apparatus through the secretory pathway to the plastids.
    Plant Cell, 2009. 21(9): p. 2844-58
    [PMID:19767453]
  6. Kishimoto N, et al.
    Identification of the duplicated segments in rice chromosomes 1 and 5 by linkage analysis of cDNA markers of known functions.
    Theor. Appl. Genet., 1994. 88(6-7): p. 722-6
    [PMID:24186168]
  7. Sugano SS, et al.
    CRISPR/Cas9-mediated targeted mutagenesis in the liverwort Marchantia polymorpha L.
    Plant Cell Physiol., 2014. 55(3): p. 475-81
    [PMID:24443494]
  8. Kaneko K, et al.
    N-Glycomic and Microscopic Subcellular Localization Analyses of NPP1, 2 and 6 Strongly Indicate that trans-Golgi Compartments Participate in the Golgi to Plastid Traffic of Nucleotide Pyrophosphatase/Phosphodiesterases in Rice.
    Plant Cell Physiol., 2016. 57(8): p. 1610-28
    [PMID:27335351]