PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OGLUM11G13920.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | GRAS | ||||||||
Protein Properties | Length: 113aa MW: 13338.2 Da PI: 9.1237 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 58.3 | 1.6e-18 | 1 | 102 | 239 | 361 |
GRAS 239 vvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsek 332 +vv+eqea+hn++ ++erf+eal+yy+ s e + vEr llg+ei+n+ + he+le+W +rle aGF+ +pls++ OGLUM11G13920.1 1 MVVTEQEASHNAALLAERFVEALNYYAR-----------GSVEHTRVERWLLGEEIMNI------W----HERLERWVRRLEGAGFGRIPLSYY 73 79************************74...........4567779************8......4....89999******************* PP GRAS 333 aakqaklllrkvksdgyrveeesgslvlg 361 a qa+++ + + dg++v ee+g ++l OGLUM11G13920.1 74 ALLQARRVAQGLGCDGFKVREEKGNFFLF 102 ************************99873 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03514 | 5.7E-16 | 1 | 102 | IPR005202 | Transcription factor GRAS |
PROSITE profile | PS50985 | 10.069 | 1 | 95 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
Sequence ? help Back to Top |
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Protein Sequence Length: 113 aa Download sequence Send to blast |
MVVTEQEASH NAALLAERFV EALNYYARGS VEHTRVERWL LGEEIMNIWH ERLERWVRRL 60 EGAGFGRIPL SYYALLQARR VAQGLGCDGF KVREEKGNFF LFFVSTWRGR RFD |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC124151 | 2e-94 | AC124151.4 Oryza sativa Japonica Group cultivar Nipponbare chromosome 11 clone OSJNBb0019E05, complete sequence. | |||
GenBank | AP014967 | 2e-94 | AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025819415.1 | 1e-53 | scarecrow-like protein 3 | ||||
Refseq | XP_025819416.1 | 1e-53 | scarecrow-like protein 3 | ||||
Swissprot | Q9LPR8 | 2e-29 | SCL3_ARATH; Scarecrow-like protein 3 | ||||
TrEMBL | A0A0E0BJB9 | 8e-76 | A0A0E0BJB9_9ORYZ; Uncharacterized protein | ||||
STRING | OGLUM11G13920.1 | 1e-76 | (Oryza glumipatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP604 | 38 | 176 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G50420.1 | 1e-31 | scarecrow-like 3 |
Publications ? help Back to Top | |||
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