 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
OGLUM11G13820.3 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
| Family |
SBP |
| Protein Properties |
Length: 339aa MW: 35814.1 Da PI: 10.3009 |
| Description |
SBP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| OGLUM11G13820.3 | genome | OGE | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | SBP | 42.9 | 1.3e-13 | 127 | 156 | 49 | 78 |
EEETTT--SS--S-STTTT-------S--- CS
SBP 49 fhelsefDeekrsCrrrLakhnerrrkkqa 78
fh+l efD++k+sCr+rL++hn+rrrk+q+
OGLUM11G13820.3 127 FHNLAEFDDGKKSCRKRLDGHNRRRRKPQH 156
9**************************987 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 339 aa
Download sequence Send
to blast |
MEWAAAATKA ASWGMAVAAA DDAGPTMLSF AGPSSSSSSP DAAAAAAAAA AALHDFSVRA 60
RPAAXVLGRR VPVGPQPVPR LPPPPQGLRG PRQDAGGRRR RPGAALLPAM QPYRFSVHVP 120
NMLRAIFHNL AEFDDGKKSC RKRLDGHNRR RRKPQHDALN PRSFLPYHQA NQFSVYPQTF 180
PIADQNADAI MRPLDRHLPF SISFSGTFRE PKQFPFMQDG GSGLGAARHD LLRPFSSPED 240
GANITTARSA CNGVPHGLDP ECALSLLSSS LHPSPAAGIS SATAPPQFAP SSFSRIAASS 300
QAVTTAFASD GGSVAGDHVL VPAVTYEDPS QAMPFSWQV
|
| Nucleic Localization
Signal ? help
Back to Top |
 |
| No. |
Start |
End |
Sequence |
| 1 | 136 | 153 | KKSCRKRLDGHNRRRRKP |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}. |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AC133608 | 0.0 | AC133608.4 Oryza sativa Japonica Group chromosome 11 clone OSJNBb0085G12, complete sequence. |
| GenBank | AC135569 | 0.0 | AC135569.6 Oryza sativa Japonica Group chromosome 11 clone OSJNBb0018F17, complete sequence. |
| GenBank | AP014967 | 0.0 | AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence. |
