PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM11G13820.2
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family SBP
Protein Properties Length: 341aa    MW: 36012.3 Da    PI: 10.6475
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM11G13820.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP43.96.5e-141281584878
                      SEEETTT--SS--S-STTTT-------S--- CS
              SBP  48 rfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                      rfh+l efD++k+sCr+rL++hn+rrrk+q+
  OGLUM11G13820.2 128 RFHNLAEFDDGKKSCRKRLDGHNRRRRKPQH 158
                      9***************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5114112.46876156IPR004333Transcription factor, SBP-box
Gene3DG3DSA:4.10.1100.107.1E-4127143IPR004333Transcription factor, SBP-box
PfamPF031109.5E-8127155IPR004333Transcription factor, SBP-box
SuperFamilySSF1036126.08E-11128160IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MEWAAAATKA ASWGMAVAAA DDAGPTMLSF AGPSSSSSSP DAAAAAAAAA AALHDFSVRA  60
RPAAXVLGRR VPVGPQPVPR LPPPPQGLRG PRQDAGGRRR RPGAALLPAM QPLSLFDSAP  120
TRIRLKKRFH NLAEFDDGKK SCRKRLDGHN RRRRKPQHDA LNPRSFLPYH QANQFSVYPQ  180
TFPIADQNAD AIMRPLDRHL PFSISFSGTF REPKQFPFMQ DGGSGLGAAR HDLLRPFSSP  240
EDGANITTAR SACNGVPHGL DPECALSLLS SSLHPSPAAG ISSATAPPQF APSSFSRIAA  300
SSQAVTTAFA SDGGSVAGDH VLVPAVTYED PSQAMPFSWQ V
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1138155KKSCRKRLDGHNRRRRKP
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1336080.0AC133608.4 Oryza sativa Japonica Group chromosome 11 clone OSJNBb0085G12, complete sequence.
GenBankAC1355690.0AC135569.6 Oryza sativa Japonica Group chromosome 11 clone OSJNBb0018F17, complete sequence.
GenBankAP0149670.0AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015617950.11e-147putative squamosa promoter-binding-like protein 19
SwissprotQ2R3Y11e-148SPL19_ORYSJ; Putative squamosa promoter-binding-like protein 19
TrEMBLA0A0E0BJA80.0A0A0E0BJA8_9ORYZ; Uncharacterized protein
STRINGOGLUM11G13820.20.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP129612532
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50670.11e-12SBP family protein