PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM11G13820.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family SBP
Protein Properties Length: 316aa    MW: 33265.9 Da    PI: 7.907
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM11G13820.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP98.17.6e-31781332378
                      --HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
              SBP  23 vCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                      vCe+h+k+pvv+v+g+eqrfCqqCsrfh+l efD++k+sCr+rL++hn+rrrk+q+
  OGLUM11G13820.1  78 VCEAHAKTPVVVVAGQEQRFCQQCSRFHNLAEFDDGKKSCRKRLDGHNRRRRKPQH 133
                      9****************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5114122.24748131IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.83E-2777135IPR004333Transcription factor, SBP-box
Gene3DG3DSA:4.10.1100.101.4E-2078118IPR004333Transcription factor, SBP-box
PfamPF031105.0E-2478130IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MEWAAAATKA ASWGMAVAAA DDAGPTMLSF AGPSSSSSSP DAAAAAAAAA AALHDFSVRA  60
RPAAXVLGRR VPVGPQPVCE AHAKTPVVVV AGQEQRFCQQ CSRFHNLAEF DDGKKSCRKR  120
LDGHNRRRRK PQHDALNPRS FLPYHQANQF SVYPQTFPIA DQNADAIMRP LDRHLPFSIS  180
FSGTFREPKQ FPFMQDGGSG LGAARHDLLR PFSSPEDGAN ITTARSACNG VPHGLDPECA  240
LSLLSSSLHP SPAAGISSAT APPQFAPSSF SRIAASSQAV TTAFASDGGS VAGDHVLVPA  300
VTYEDPSQAM PFSWQV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A6e-20781303284squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1113130KKSCRKRLDGHNRRRRKP
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1336080.0AC133608.4 Oryza sativa Japonica Group chromosome 11 clone OSJNBb0085G12, complete sequence.
GenBankAC1355690.0AC135569.6 Oryza sativa Japonica Group chromosome 11 clone OSJNBb0018F17, complete sequence.
GenBankAP0149670.0AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015617950.11e-168putative squamosa promoter-binding-like protein 19
SwissprotQ2R3Y11e-169SPL19_ORYSJ; Putative squamosa promoter-binding-like protein 19
TrEMBLA0A0E0BJA70.0A0A0E0BJA7_9ORYZ; Uncharacterized protein
STRINGORGLA11G0121600.11e-172(Oryza glaberrima)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50670.14e-27SBP family protein