PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OGLUM11G09770.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | AP2 | ||||||||
Protein Properties | Length: 590aa MW: 63148.5 Da PI: 6.3928 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 34.2 | 6.5e-11 | 175 | 231 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV+ ++++gr++A+++d + ++ k + g ++ +e+Aa+a++ a++k++g OGLUM11G09770.1 175 SIYRGVTKHRWTGRYEAHLWDnSCR-RegQTrKGRQ-GGYDKEEKAARAYDLAALKYWG 231 57*******************4444.2455535555.779999**************98 PP | |||||||
2 | AP2 | 51.1 | 3.3e-16 | 274 | 325 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV+++++ grW A+I + +k +lg+fgt eeAa+a++ a+ k++g OGLUM11G09770.1 274 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFGTQEEAAEAYDIAAIKFRG 325 57****************988532...5************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 2.9E-8 | 175 | 231 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.08E-18 | 175 | 241 | No hit | No description |
SuperFamily | SSF54171 | 1.5E-14 | 175 | 241 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 5.7E-23 | 176 | 245 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.0E-11 | 176 | 240 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 17.122 | 176 | 239 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.9E-6 | 177 | 188 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 4.2E-11 | 274 | 325 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.59E-24 | 274 | 335 | No hit | No description |
SuperFamily | SSF54171 | 1.05E-17 | 274 | 335 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 18.834 | 275 | 333 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 6.0E-33 | 275 | 339 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.2E-17 | 275 | 334 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.9E-6 | 315 | 335 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 590 aa Download sequence Send to blast |
MASITNWLGF SSSFSGAGAD PVLPHPPLQG KTSHLMHQWG SAYEGGGTVA AAGGEETAAP 60 KLEDFLGMQG QQETAAAAAG HGRGGSSSVV GLSMIKNWLR SQPPPAVVGG EDAMMALAVS 120 TSASPPVDAT APACISPDGM GSKAADGGGA AEAAAAAAAA QRMKAAMDTF GQRTSIYRGV 180 TKHRWTGRYE AHLWDNSCRR EGQTRKGRQG GYDKEEKAAR AYDLAALKYW GTTTTTNFPV 240 SNYEKELDEM KHMNRQEFVA SLRRKSSGFS RGASIYRGVT RHHQHGRWQA RIGRVAGNKD 300 LYLGTFGTQE EAAEAYDIAA IKFRGLNAVT NFDMSRYDVK SIIESSNLPI GTGTTRGIKD 360 SSDHTDNVMD INVNTEPNNV VSSHFTNGVG NYGSQHYGYN GWSPISMQPI PSQYANGQPR 420 AWLKQEQDSS VVTAAQNLHN LHHFSSLGYT HNFFQQSDVP DVTGLVDAPS RSSDSYSFRY 480 NGTNGFHGLP GGISYAMPVA TAVDQGQGIH GYGEDGVAGI DTTHDLYGSR NVYYLSEGSL 540 VADVEKEGDY GQSVGGNSWV LPTPESEMVE KADNVTVCHG MPLFSVWNDA |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that promotes cell proliferation, differentiation and morphogenesis, especially during embryogenesis. {ECO:0000269|PubMed:12172019}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK287621 | 0.0 | AK287621.1 Oryza sativa Japonica Group cDNA, clone: J065066I09, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025876947.1 | 0.0 | AP2-like ethylene-responsive transcription factor BBM1 | ||||
Swissprot | Q8LSN2 | 1e-124 | BBM2_BRANA; AP2-like ethylene-responsive transcription factor BBM2 | ||||
TrEMBL | A0A0E0BHY9 | 0.0 | A0A0E0BHY9_9ORYZ; Uncharacterized protein | ||||
STRING | OGLUM11G09770.1 | 0.0 | (Oryza glumipatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1569 | 37 | 110 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G17430.1 | 1e-115 | AP2 family protein |