PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM11G07850.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ZF-HD
Protein Properties Length: 334aa    MW: 34628.6 Da    PI: 8.3485
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM11G07850.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer100.61.1e-3193147358
      ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 
                      +v+Y+eClkNhAa++Gg+a+DGCgEfmps geeg+ +alkC+ACgCHRnFHR+e +
  OGLUM11G07850.1  93 AVKYRECLKNHAAAIGGNATDGCGEFMPS-GEEGSLEALKCSACGCHRNFHRKEAD 147
                      689*************************9.999********************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047702.8E-2994146IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015662.0E-3095145IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.73596145IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257741.0E-2496147IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466897.17E-14241303IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.1E-23243303IPR009057Homeodomain-like
TIGRFAMsTIGR015652.2E-21254303IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MDLSGAQGEL PIPMHASAAA SPFAGMGAHG GAGGGYVVEL HHHHEHVGNN GQAMAMASPP  60
PTNVAVAAEQ EGSPVAGKKR GGMAVVGGGG GVAVKYRECL KNHAAAIGGN ATDGCGEFMP  120
SGEEGSLEAL KCSACGCHRN FHRKEADDLD ADSCAAALRA AAGRHHHLLG PALPHHHHKN  180
GGGLLVAGGX XYGAAYAAAR ALPPPPPPPP HGHHHHHQII MPLNMIHTSE SDEMDVSGGG  240
GGGGRGGGSS SSSKKRFRTK FTAEQKARML EFAERVGWRL QKLDDAMVHH FCQEIGVKRR  300
VLKHAVGDVT VAFMSDHLTS KIKGVKTEEI KKGV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A2e-182533031666ZF-HD homeobox family protein
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1236248SGGGGGGGRGGGS
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126190.0CP012619.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 11 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025876888.11e-143zinc-finger homeodomain protein 4
SwissprotQ53N871e-145ZHD4_ORYSJ; Zinc-finger homeodomain protein 4
TrEMBLA0A0E0BH780.0A0A0E0BH78_9ORYZ; Uncharacterized protein
STRINGOGLUM11G07850.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP81535145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14440.23e-27homeobox protein 31