PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM11G02220.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 275aa    MW: 29956.8 Da    PI: 4.1968
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM11G02220.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM286e-091766250
              NAM  2 ppGfrFhPtdeelvveyLkkkvegkklel.eevikevdiykvePwdLpkk 50
                     p G+ F P+ e+l+ +yL++ ++g++ e+  ++++e+d+y ++P +L ++
  OGLUM11G02220.1 17 PSGYFFVPKPEQLIRDYLNHWITGRPSEElRDIVREADVYGSDPATLTEA 66
                     89************************66515679999**********742 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.18E-81570IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MAEEDDKKQK GPDVTVPSGY FFVPKPEQLI RDYLNHWITG RPSEELRDIV READVYGSDP  60
ATLTEAHSAY GHDGNNLPAA ITDEGIMVIC KVYLSPRAKE ATADEEERQE TNVVPGPKRL  120
REAEATGYDA PAPETPQPDV GCSYSGGGET SQATASMDYC CSTTTHTADD TANAAYYHGD  180
ADAIKPDAYD GGDYGIGINA DGELVLCGNG HGGIGTQGQM PLAMQNTNGE MTLFSPMNGY  240
GVGFNEEVRQ EPQVEGEVEM DNFFNDLFRR LRRRR
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0149680.0AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence.
GenBankBX0005020.0BX000502.2 Oryza sativa chromosome 12, . BAC OSJNBb0041E01 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
GenBankCP0126200.0CP012620.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 12 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0E0BF440.0A0A0E0BF44_9ORYZ; Uncharacterized protein
STRINGOGLUM11G02220.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP114741834