PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM11G01180.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GRAS
Protein Properties Length: 321aa    MW: 34970.9 Da    PI: 7.0181
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM11G01180.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS352.66e-108131449374
             GRAS  49 Laarlarsvselykal.ppsetseknsseelaalklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpps 141
                      ++arl++s+ +ly+ l +ps+++ + + +++aa+++f+ +sP++kfsh+taNqaI ea+e+eervHiiD+di+qGlQWp L++ LasRp+gpp+
  OGLUM11G01180.1   1 MSARLVSSCLGLYAPLpNPSPAAARLHGRVAAAFQVFNGISPFVKFSHFTANQAIQEAFEREERVHIIDLDIMQGLQWPGLFHILASRPGGPPR 94 
                      5799************777777777799999*************************************************************** PP

             GRAS 142 lRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvksls 235
                      +R+Tg+g+    s e+le+tg+rL++fA++lg+pfef + va++  +l++e+L v ++Ea+aV++    h+l+d ++s ++    +L+l+++l 
  OGLUM11G01180.1  95 VRLTGLGA----SMEALEATGKRLSDFADTLGLPFEFCP-VADKAGNLDPEKLGVTRREAVAVHWLR--HSLYDVTGSDSN----TLWLIQRLA 177
                      ********....***************************.7************************99..999999999999....********* PP

             GRAS 236 PkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvpl 329
                      Pkvv++veq+++h s+sFl+rf+ea++yysalfdsl+a+++++s er++vE++ll+rei+nv+a  g +r+ + + +++Wre+l ++GF+  +l
  OGLUM11G01180.1 178 PKVVTMVEQDLSH-SGSFLARFVEAIHYYSALFDSLDASYSEDSPERHVVEQQLLSREIRNVLAVGGPARTGDVK-FGSWREKLAQSGFRVSSL 269
                      *************.899****************************************************999987.****************** PP

             GRAS 330 sekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                        +aa+qa lll +++sdgy++ ee+g+l lgWkd  L+++SaWr
  OGLUM11G01180.1 270 AGSAAAQAALLLGMFPSDGYTLIEENGALKLGWKDLCLLTASAWR 314
                      ********************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF035142.1E-1051314IPR005202Transcription factor GRAS
PROSITE profilePS5098552.1551294IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008356Biological Processasymmetric cell division
GO:0009630Biological Processgravitropism
GO:0009956Biological Processradial pattern formation
GO:0048366Biological Processleaf development
GO:0051457Biological Processmaintenance of protein location in nucleus
GO:0090610Biological Processbundle sheath cell fate specification
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MSARLVSSCL GLYAPLPNPS PAAARLHGRV AAAFQVFNGI SPFVKFSHFT ANQAIQEAFE  60
REERVHIIDL DIMQGLQWPG LFHILASRPG GPPRVRLTGL GASMEALEAT GKRLSDFADT  120
LGLPFEFCPV ADKAGNLDPE KLGVTRREAV AVHWLRHSLY DVTGSDSNTL WLIQRLAPKV  180
VTMVEQDLSH SGSFLARFVE AIHYYSALFD SLDASYSEDS PERHVVEQQL LSREIRNVLA  240
VGGPARTGDV KFGSWREKLA QSGFRVSSLA GSAAAQAALL LGMFPSDGYT LIEENGALKL  300
GWKDLCLLTA SAWRPIQASG R
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A0.0131567380Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor required for quiescent center cells specification and maintenance of surrounding stem cells, and for the asymmetric cell division involved in radial pattern formation in roots. Essential for cell division but not differentiation of the ground tissue. Regulates the radial organization of the shoot axial organs. Restricts SHR movment and sequesters it into the nucleus of the endodermis (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0734670.0AK073467.1 Oryza sativa Japonica Group cDNA clone:J033044H21, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015615402.10.0protein SCARECROW 1
SwissprotA2ZAX50.0SCR1_ORYSI; Protein SCARECROW 1
TrEMBLA0A0D3HHL90.0A0A0D3HHL9_9ORYZ; Uncharacterized protein
TrEMBLA0A0D3HQT40.0A0A0D3HQT4_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0BEQ60.0A0A0E0BEQ6_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0RD240.0A0A0E0RD24_ORYRU; Uncharacterized protein
STRINGOGLUM11G01180.10.0(Oryza glumipatula)
STRINGOS11T0124300-010.0(Oryza sativa)
STRINGOBART11G01460.10.0(Oryza barthii)
STRINGOBART12G01190.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP137138122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54220.11e-172GRAS family protein