PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM10G19850.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 301aa    MW: 32715.3 Da    PI: 7.5
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM10G19850.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.71.5e-30154212259
                      --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                      +D ++WrKYGqK++kgs++pr+YYrC+s+ gC+++k+vers+ dp+++++tY+++Hnh+
  OGLUM10G19850.1 154 SDLWAWRKYGQKPIKGSPYPRGYYRCSSSkGCSARKQVERSRADPTMLVVTYTSDHNHP 212
                      699************************998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081132.374148214IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.3E-30152214IPR003657WRKY domain
SuperFamilySSF1182907.32E-26152214IPR003657WRKY domain
SMARTSM007741.4E-36153213IPR003657WRKY domain
PfamPF031061.6E-25155212IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MCDSLFWQSS ADQGDLSDVV RASLQLQTAP RHQAASPPYV HLLGGGGGGG GEDQLAAVSQ  60
HAEQQQQSMV DASAACDLLH ALLPPPPVVQ VQQQGASRTR TTIEEDTTGD GEELFAGAHY  120
VVPPIKRRKS QTKKVVCIPA GASGGGGGGE VVPSDLWAWR KYGQKPIKGS PYPRGYYRCS  180
SSKGCSARKQ VERSRADPTM LVVTYTSDHN HPWPTHRNAL AGSTRPSSSN SSNIRLQDST  240
PVHHQSQTGH DRLTTTHLKQ EDVIISPSLL QPDHHQLCTI IDTKHHLLFH QDYPHSFGFF  300
D
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B5e-24129215280Disease resistance protein RRS1
5w3x_D5e-24129215280Disease resistance protein RRS1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC9546100.0KC954610.1 Oryza sativa Japonica Group cultivar Dongjin WRKY2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015613758.10.0protein WRKY1
RefseqXP_015613759.10.0protein WRKY1
TrEMBLA0A0E0BE950.0A0A0E0BE95_9ORYZ; Uncharacterized protein
STRINGOGLUM10G19850.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP118473039
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34830.11e-54WRKY DNA-binding protein 35