PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM10G19040.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family STAT
Protein Properties Length: 608aa    MW: 67453.2 Da    PI: 6.0722
Description STAT family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM10G19040.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1STAT188.76.6e-591762961121
             STAT   1 ldvvllnalgqpvekdvevvasLlyadsglvveks.ddaeapLLisydGvefssedrplkllrGrasfklkisqLsskcdnrLfrikfeipklk 93 
                      l+v+l++a+g+++ kd e+vasL+yad+g++veks dd+e+pLLis+dG+e+++++rpl+++rGra+fklkisqLsskcdn+Lfri f+++ +k
  OGLUM10G19040.2 176 LEVILVDAFGEAA-KDREIVASLVYADNGALVEKSrDDSEPPLLISCDGIEYPAVSRPLPIIRGRALFKLKISQLSSKCDNKLFRIFFSTLGMK 268
                      79**********7.*********************9********************************************************** PP

             STAT  94 kypfleavskpirCisrsrntrsssltk 121
                      +ypflea+skpirCisr+r++r+++++k
  OGLUM10G19040.2 269 RYPFLEAYSKPIRCISRNRTSRPLGSAK 296
                      **********************988765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF498994.51E-726144IPR013320Concanavalin A-like lectin/glucanase domain
SuperFamilySSF555502.41E-5525594IPR000980SH2 domain
PROSITE profilePS500019.426532608IPR000980SH2 domain
Sequence ? help Back to Top
Protein Sequence    Length: 608 aa     Download sequence    Send to blast
MAAPPGRGGA DGYCDLRDVR LELDPGKVRG GGGFTVCFWL YLSSSARPSS VILHQVAEGG  60
GDKVPFLALG EGNKLILFPL LGFHREAPTP GSSYPWTDIT NLTEVNECPL DNWFHVGCEV  120
TENIMRLHLD GDLVAETHLH SLYNKPDYQD DANQINLLGS EDKLEGYASC RRNFILEVIL  180
VDAFGEAAKD REIVASLVYA DNGALVEKSR DDSEPPLLIS CDGIEYPAVS RPLPIIRGRA  240
LFKLKISQLS SKCDNKLFRI FFSTLGMKRY PFLEAYSKPI RCISRNRTSR PLGSAKRIGS  300
ASMGDIQSIN NCEGFGHSGK ANGRLQTHDP SSVNKHAKKM VLDKGAQDVM VSDSTASDYD  360
SMDAGSSWSL SDGDDVESFS DAEIFRYCLD GTHERSKFLR AAAPSVNEDD LIKLANQVSL  420
YSGCAHHRNQ ILMSKQLLQE GADIWSIISK NNERALWSSA VPEIKAKFLE IVHPSNRGLL  480
EQDFEVLRGI SGCGDDIGRD EFDKLWSWLY PVAVALSKDK INRLWDFTAH RWIEGLITLQ  540
ETENALRSSQ DRLMKPGTFV LRFPTTRSWP HPDAGSLVVT YVGSDNSIHH RLLSLDVRVD  600
RLPSSMQS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0708290.0AK070829.1 Oryza sativa Japonica Group cDNA clone:J023065P16, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015614085.10.0SH2 domain-containing protein A isoform X2
TrEMBLA0A0E0BDX70.0A0A0E0BDX7_9ORYZ; Uncharacterized protein
STRINGOGLUM10G19040.10.0(Oryza glumipatula)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78540.11e-132SH2 domain protein B