PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM10G19040.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family STAT
Protein Properties Length: 629aa    MW: 69845.9 Da    PI: 6.1462
Description STAT family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM10G19040.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1STAT188.77e-591762961121
             STAT   1 ldvvllnalgqpvekdvevvasLlyadsglvveks.ddaeapLLisydGvefssedrplkllrGrasfklkisqLsskcdnrLfrikfeipklk 93 
                      l+v+l++a+g+++ kd e+vasL+yad+g++veks dd+e+pLLis+dG+e+++++rpl+++rGra+fklkisqLsskcdn+Lfri f+++ +k
  OGLUM10G19040.1 176 LEVILVDAFGEAA-KDREIVASLVYADNGALVEKSrDDSEPPLLISCDGIEYPAVSRPLPIIRGRALFKLKISQLSSKCDNKLFRIFFSTLGMK 268
                      79**********7.*********************9********************************************************** PP

             STAT  94 kypfleavskpirCisrsrntrsssltk 121
                      +ypflea+skpirCisr+r++r+++++k
  OGLUM10G19040.1 269 RYPFLEAYSKPIRCISRNRTSRPLGSAK 296
                      **********************988765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF498995.28E-726144IPR013320Concanavalin A-like lectin/glucanase domain
SuperFamilySSF555502.51E-5546615IPR000980SH2 domain
PROSITE profilePS500019.426553629IPR000980SH2 domain
Sequence ? help Back to Top
Protein Sequence    Length: 629 aa     Download sequence    Send to blast
MAAPPGRGGA DGYCDLRDVR LELDPGKVRG GGGFTVCFWL YLSSSARPSS VILHQVAEGG  60
GDKVPFLALG EGNKLILFPL LGFHREAPTP GSSYPWTDIT NLTEVNECPL DNWFHVGCEV  120
TENIMRLHLD GDLVAETHLH SLYNKPDYQD DANQINLLGS EDKLEGYASC RRNFILEVIL  180
VDAFGEAAKD REIVASLVYA DNGALVEKSR DDSEPPLLIS CDGIEYPAVS RPLPIIRGRA  240
LFKLKISQLS SKCDNKLFRI FFSTLGMKRY PFLEAYSKPI RCISRNRTSR PLGSAKRIGS  300
ASMGDIQSIN NCEGFGHSGK ANGRLQTHDP SSVVCFHPSK FSKIEDDVQK TSSQNKHAKK  360
MVLDKGAQDV MVSDSTASDY DSMDAGSSWS LSDGDDVESF SDAEIFRYCL DGTHERSKFL  420
RAAAPSVNED DLIKLANQVS LYSGCAHHRN QILMSKQLLQ EGADIWSIIS KNNERALWSS  480
AVPEIKAKFL EIVHPSNRGL LEQDFEVLRG ISGCGDDIGR DEFDKLWSWL YPVAVALSKD  540
KINRLWDFTA HRWIEGLITL QETENALRSS QDRLMKPGTF VLRFPTTRSW PHPDAGSLVV  600
TYVGSDNSIH HRLLSLDVRV DRLPSSMQS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0708290.0AK070829.1 Oryza sativa Japonica Group cDNA clone:J023065P16, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015614084.10.0SH2 domain-containing protein A isoform X1
TrEMBLA0A0E0BDX60.0A0A0E0BDX6_9ORYZ; Uncharacterized protein
STRINGOGLUM10G19040.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP75473135
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78540.11e-132SH2 domain protein B