PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM10G17950.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GRAS
Protein Properties Length: 962aa    MW: 102349 Da    PI: 8.3697
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM10G17950.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS305.21.5e-932976582374
             GRAS   2 velLlecAeavssgdlelaqalLarlsel...aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilk 92 
                      ve+L e+A+  ++gd+  a+++Larl+ +   a  +g+p+ R a+yf+eAL+  l+     + +a +ps++++++++ +l a+k+fsevsP+l+
  OGLUM10G17950.1 297 VEQLAEAAKLAEAGDAFGAREILARLNYRlpaAPTAGTPLLRSAFYFKEALRLALSP----TGDAPAPSASTPYDVVVKLGAYKAFSEVSPVLQ 386
                      789*************************999555566******************99....999999*************************** PP

             GRAS  93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrl 186
                      f+hlt+ qa+l+++ g+ ++H++Dfdi++G QW++L+q+La+R ++++ l++T+++sp+s++  el+ ++e+L+ fA+elgv f+f+v+   ++
  OGLUM10G17950.1 387 FAHLTCVQAVLDELGGAGCIHVLDFDIGMGEQWASLMQELAQR-RPAAALKVTALVSPASHHPLELQLIHENLSGFAAELGVFFHFTVF---NI 476
                      ******************************************9.7889****************************************9...77 PP

             GRAS 187 edleleeL.rvkp.gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpre 278
                      ++l++ eL ++ + g+a+aV+l +   +          ++++vL+lvk+l +kvvv v++ +d+++ +F+++++++++  ++l++s++a  +++
  OGLUM10G17950.1 477 DTLDPAELlAIATaGDAVAVHLPVGPAHAA--------ATPAVLRLVKRLGAKVVVSVDRGCDRSDLPFAAHLFHSFHSAVYLLESIDAV-GTD 561
                      77777665366668**********999997........5678*********************************************998.788 PP

             GRAS 279 seerikvErellgreivnvvacegae.rrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvS 371
                       ++++k+Er l++++i+++v +++++ + +++     Wr+++ +aGF pv+ +++a++qa++ll+kv+++g+rve++ gsl+l+W++ +LvsvS
  OGLUM10G17950.1 562 PDTASKIERYLIHPAIEQCVVARHRAaSAMDKAPPPPWRAAFAAAGFAPVQATTFAESQAESLLSKVHVRGFRVEKRAGSLCLYWQRGELVSVS 655
                      8*****************98888776589999999*********************************************************** PP

             GRAS 372 aWr 374
                      aWr
  OGLUM10G17950.1 656 AWR 658
                      **8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098540.71270638IPR005202Transcription factor GRAS
PfamPF035145.3E-91297658IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 962 aa     Download sequence    Send to blast
MPFGGSAREG HAGTLLQHHL IHGVGLAAAG KLVSSSSAAA AAAAGAGGFW EPRSVLDHRH  60
SPSPSPPTSA STLSSPLADV AALAGANAKN VSVSPPPPGW VTGGGGGGGE EVVAAKEEWV  120
HQLTPLDMGL GAGEGWDAAG NVLSDAAAAA TSGMAPDNTF LRWIIGGGED ASAAMAGVMD  180
PPVLELDHGG GGGAAPAAFG PFAPPPAMED TKPVVPFAAG HPPPNFLLQH HHHHPQPHAA  240
FFGAHHPSFD AAPPPSKRHH PMAAAPAPKL PPFPAGGFVP ALKPKAEAAN DEAAAAVEQL  300
AEAAKLAEAG DAFGAREILA RLNYRLPAAP TAGTPLLRSA FYFKEALRLA LSPTGDAPAP  360
SASTPYDVVV KLGAYKAFSE VSPVLQFAHL TCVQAVLDEL GGAGCIHVLD FDIGMGEQWA  420
SLMQELAQRR PAAALKVTAL VSPASHHPLE LQLIHENLSG FAAELGVFFH FTVFNIDTLD  480
PAELLAIATA GDAVAVHLPV GPAHAAATPA VLRLVKRLGA KVVVSVDRGC DRSDLPFAAH  540
LFHSFHSAVY LLESIDAVGT DPDTASKIER YLIHPAIEQC VVARHRAASA MDKAPPPPWR  600
AAFAAAGFAP VQATTFAESQ AESLLSKVHV RGFRVEKRAG SLCLYWQRGE LVSVSAWRCR  660
VPCRNGVVLL LPLPVLEMQR KGGNHGVKRP CFTEMAAKHL RVRTGTSRTA AATLDGYTTL  720
TWDSAPEWPW HRMHKPDRLR WAHWRVTGEP QCAAGAVAIG QASGHTGVRD TAGANWQETC  780
IVVTEMDVKL ADKFRKKWYH SSKLQSKNVV CAGDSQSAQG QEFTLFPPPT SAHFSRSLVS  840
HLQPLKYHES IAERRCTVGL IKQDLKVQNQ GGESEASRHK GLQISFRQVQ ISLRKPNRKC  900
KHSGQTVKLI NENCYYLSTK RNNLKMKEVN YRCYIYAEEL HPLKVMFRNT QAKICQIDVQ  960
KS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A2e-2532865832375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0149660.0AP014966.1 Oryza sativa Japonica Group DNA, chromosome 10, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020184487.10.0scarecrow-like protein 6
TrEMBLA0A0E0BDI30.0A0A0E0BDI3_9ORYZ; Uncharacterized protein
STRINGOGLUM10G17950.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP67232954
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.18e-80GRAS family protein