PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM10G17290.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family G2-like
Protein Properties Length: 294aa    MW: 32457 Da    PI: 10.1332
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM10G17290.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like92.63.4e-292677253
          G2-like  2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkY 53
                     prlrWtp+LH++Fv+a+++LGG++kAtPk++l+lm+v gLt++hvkSHLQ +
  OGLUM10G17290.1 26 PRLRWTPDLHHCFVHAIHKLGGQHKATPKRVLQLMGVGGLTISHVKSHLQAF 77
                     8*************************************************87 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.0442282IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.5E-272277IPR009057Homeodomain-like
SuperFamilySSF466892.87E-142480IPR009057Homeodomain-like
TIGRFAMsTIGR015576.0E-222677IPR006447Myb domain, plants
PfamPF002491.3E-82775IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MAMVRGTMVR RERIEGVRQY NRSKVPRLRW TPDLHHCFVH AIHKLGGQHK ATPKRVLQLM  60
GVGGLTISHV KSHLQAFSRW MIRSKHLQEA CKFGQICSCR IIIMSAMDPI ADATPHQNMQ  120
RAHCCCYTTT SSSNSCKGQM RWRRDEQRRA PKQAFSEAKE YVRGTCPPAS LSQLPTTRPW  180
RTAHHLPPQT EHKATPPPEN GAIRHGRKAR RTTAAAEEEE RDGDGDELSL SLTLDSGLSC  240
RSSAGAGAYC CSEGSSSNWL ISSPSSTTSP VAGGCSRRST PAMLSSVVSL DLSL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A4e-152777353Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B4e-152777353Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C4e-152777353Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D4e-152777353Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126181e-171CP012618.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 10 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025876555.11e-114uncharacterized protein LOC112936623 isoform X2
TrEMBLA0A0E0BD910.0A0A0E0BD91_9ORYZ; Uncharacterized protein
STRINGOGLUM10G17290.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP76102950
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02060.15e-27G2-like family protein