PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | OGLUM10G17290.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
||||||||
Family | G2-like | ||||||||
Protein Properties | Length: 294aa MW: 32457 Da PI: 10.1332 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 92.6 | 3.4e-29 | 26 | 77 | 2 | 53 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkY 53 prlrWtp+LH++Fv+a+++LGG++kAtPk++l+lm+v gLt++hvkSHLQ + OGLUM10G17290.1 26 PRLRWTPDLHHCFVHAIHKLGGQHKATPKRVLQLMGVGGLTISHVKSHLQAF 77 8*************************************************87 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.044 | 22 | 82 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.5E-27 | 22 | 77 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.87E-14 | 24 | 80 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 6.0E-22 | 26 | 77 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.3E-8 | 27 | 75 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 294 aa Download sequence Send to blast |
MAMVRGTMVR RERIEGVRQY NRSKVPRLRW TPDLHHCFVH AIHKLGGQHK ATPKRVLQLM 60 GVGGLTISHV KSHLQAFSRW MIRSKHLQEA CKFGQICSCR IIIMSAMDPI ADATPHQNMQ 120 RAHCCCYTTT SSSNSCKGQM RWRRDEQRRA PKQAFSEAKE YVRGTCPPAS LSQLPTTRPW 180 RTAHHLPPQT EHKATPPPEN GAIRHGRKAR RTTAAAEEEE RDGDGDELSL SLTLDSGLSC 240 RSSAGAGAYC CSEGSSSNWL ISSPSSTTSP VAGGCSRRST PAMLSSVVSL DLSL |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 4e-15 | 27 | 77 | 3 | 53 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 4e-15 | 27 | 77 | 3 | 53 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 4e-15 | 27 | 77 | 3 | 53 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 4e-15 | 27 | 77 | 3 | 53 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | CP012618 | 1e-171 | CP012618.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 10 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_025876555.1 | 1e-114 | uncharacterized protein LOC112936623 isoform X2 | ||||
TrEMBL | A0A0E0BD91 | 0.0 | A0A0E0BD91_9ORYZ; Uncharacterized protein | ||||
STRING | OGLUM10G17290.1 | 0.0 | (Oryza glumipatula) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7610 | 29 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G02060.1 | 5e-27 | G2-like family protein |