PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM10G17040.1

Organism

Oryza glumaepatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

Protein Properties

Length: 319aa MW: 33755.9 Da PI: 9.9412

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM10G17040.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	93.8	1.2e-29	38	155	1	99
EEEE-..-HHHHTT-EE--HHH.HTT...................---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT-- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh...................ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLk 75 f+kv tpsdv+k++rlv+pk++ae++ g ++ l++ed++g+ W+++++y+++s++yv+tkGW++Fvk+++L OGLUM10G17040.1 38 FEKVVTPSDVGKLNRLVIPKQHAERYfpldaaagaggggggggggG--GGKGLVLSFEDRTGKAWRFRYSYWNSSQSYVMTKGWSRFVKEKRLG 129 99****************************99999999998543..347789************************************ PP TT-EEEEEE-.SS.SEE..EEEEE-S CS B3 76 egDfvvFkld.gr.sefelvvkvfrk 99 +gD+v F + g+ +++l++ ++r+ OGLUM10G17040.1 130 AGDTVSFGRGlGDaARGRLFIDFRRR 155 ******666888999999999987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	1.5E-37	31	153	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	2.09E-28	35	139	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	3.58E-24	36	136	No hit	No description
SMART	SM01019	1.4E-21	38	156	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	13.338	38	156	IPR003340	B3 DNA binding domain
Pfam	PF02362	8.7E-27	38	155	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 319 aa Download sequence Send to blast
MEFTPISPLT RVAGGEEDSE RGAAAAAAWA VVEKEHMFEK VVTPSDVGKL NRLVIPKQHA 60 ERYFPLDAAA GAGGGGGGGG GGGGGKGLVL SFEDRTGKAW RFRYSYWNSS QSYVMTKGWS 120 RFVKEKRLGA GDTVSFGRGL GDAARGRLFI DFRRRRHDAG SFMFPPTAAP PSHSHHHHQR 180 HHPPLPSVPL CPWRDYTTAY GGGYGYGYGY GYGGGSTPAS SRHVLFLRPQ VPAAVVLKSV 240 PVHVAAASAV QEAATTTRPK RVRLFGVNLD CPAAMDDDDD IAGAASRTAA SSLLQLPSPS 300 SSTSSSTAGK KICSLDLGL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5os9_A	3e-55	31	155	1	113	B3 domain-containing transcription factor NGA1
5os9_B	3e-55	31	155	1	113	B3 domain-containing transcription factor NGA1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC074196	0.0	AC074196.14 Oryza sativa chromosome 10 BAC OSJNBa0040D23 genomic sequence, complete sequence.
GenBank	AP014966	0.0	AP014966.1 Oryza sativa Japonica Group DNA, chromosome 10, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015613852.1	1e-158	putative B3 domain-containing protein Os10g0537100
Swissprot	Q8LNN8	1e-159	Y1071_ORYSJ; Putative B3 domain-containing protein Os10g0537100
TrEMBL	A0A0E0BD59	0.0	A0A0E0BD59_9ORYZ; Uncharacterized protein
STRING	OGLUM10G17040.1	0.0	(Oryza glumipatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP583	37	168

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G61970.1	5e-47	B3 family protein

Publications ? help Back to Top
Rice Chromosome 10 Sequencing Consortium In-depth view of structure, activity, and evolution of rice chromosome 10. Science, 2003. 300(5625): p. 1566-9 [PMID:12791992]