PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OGLUM10G12240.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | G2-like | ||||||||
Protein Properties | Length: 290aa MW: 33240.6 Da PI: 6.6746 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 85 | 7.8e-27 | 147 | 200 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k rl Wt++LH++F+ av++L G++kA+Pk+il +mkvk Lt+e+v+SHLQkYR+ OGLUM10G12240.2 147 KSRLTWTTQLHRQFIAAVNHL-GEDKAVPKKILGIMKVKHLTREQVASHLQKYRM 200 68*******************.********************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF52172 | 4.01E-10 | 10 | 93 | IPR011006 | CheY-like superfamily |
Gene3D | G3DSA:3.40.50.2300 | 3.8E-8 | 37 | 89 | No hit | No description |
PROSITE profile | PS51294 | 12.473 | 144 | 203 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.03E-19 | 145 | 204 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.3E-26 | 146 | 204 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.3E-24 | 147 | 200 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 3.4E-7 | 149 | 199 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0048576 | Biological Process | positive regulation of short-day photoperiodism, flowering | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 290 aa Download sequence Send to blast |
MDHRELWPYG LRVLVIDDDC SYLSVMEDLL LKCSYKVMAS SGDTNTVMKY VANGASDFLL 60 KPVRIEELSN IWQHIFRKQI QDHKNNNMVG NLEKPGHPPS ILAMARATPA TTRSTATEAS 120 LAPLENEVRD DMVNYNGEIT DIRDLRKSRL TWTTQLHRQF IAAVNHLGED KAVPKKILGI 180 MKVKHLTREQ VASHLQKYRM QLKKSIPTTS KHGATLSSTA LDKTQDHPSR SQYFNQDGCM 240 EIMDYSLPRD NLSSGSECML EEQNDYSSEG FQDFRWDSDK QEYGPCFWNF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1irz_A | 1e-18 | 146 | 204 | 4 | 62 | ARR10-B |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that acts as floral inducer to promote short-day (SD) flowering pathway. Activates Hd3a and other FT-like genes independently from Hd1. May also activate MADS-box transcription factors involved in flowering regulation. {ECO:0000269|PubMed:15078816}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Daily oscillation and diurnal expression in plants grown in short day (SD) but not in long day (LD) conditions. {ECO:0000269|PubMed:15078816}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KC609245 | 0.0 | KC609245.1 Oryza glumipatula early heading date 1 (Ehd1) gene, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025876814.1 | 0.0 | two-component response regulator ORR30 | ||||
Swissprot | Q7Y0W3 | 0.0 | EHD1_ORYSI; Two-component response regulator EHD1 | ||||
TrEMBL | A0A0E0BBD9 | 0.0 | A0A0E0BBD9_9ORYZ; Uncharacterized protein | ||||
TrEMBL | A0A0E0BBE0 | 0.0 | A0A0E0BBE0_9ORYZ; Uncharacterized protein | ||||
STRING | OGLUM10G12240.1 | 0.0 | (Oryza glumipatula) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G16857.1 | 1e-34 | response regulator 1 |