PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM10G10610.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family M-type_MADS
Protein Properties Length: 184aa    MW: 19620.3 Da    PI: 10.6215
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM10G10610.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF45.87.8e-152066349
                     --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
           SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                     ie k ++qvt skRr g++KKA+ELS   +a +a++ fs+ g+++ +
  OGLUM10G10610.1 20 IEGKEKQQVTCSKRRRGLFKKASELSRTSGASIAIVSFSKAGNVFAF 66
                     89999**************************************9887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006618.8531070IPR002100Transcription factor, MADS-box
SMARTSM004322.8E-151069IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.88E-181179IPR002100Transcription factor, MADS-box
PRINTSPR004047.5E-111232IPR002100Transcription factor, MADS-box
PfamPF003191.2E-162066IPR002100Transcription factor, MADS-box
PRINTSPR004047.5E-113247IPR002100Transcription factor, MADS-box
PRINTSPR004047.5E-114768IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 184 aa     Download sequence    Send to blast
MGRPRGGTSK GKQKIEMCCI EGKEKQQVTC SKRRRGLFKK ASELSRTSGA SIAIVSFSKA  60
GNVFAFGAPS VDAVLRRHAV AGPPTSTAHG HAGGDVFTGD EDPEVLNALK RATDEATAEV  120
AAEDARLSGV EGKIARAMAA ERRFWWEANV EALGEAELPV FDRALQKLRG AVVRRRLAAA  180
TRSS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126140.0CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015642715.11e-84agamous-like MADS-box protein AGL61
TrEMBLA0A0E0BAT21e-129A0A0E0BAT2_9ORYZ; Uncharacterized protein
STRINGOGLUM10G10610.11e-129(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2047878
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36590.12e-20M-type_MADS family protein