PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM10G08720.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 390aa    MW: 42215.2 Da    PI: 7.0566
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM10G08720.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM81.51.8e-2511351125
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkklel.eevikevdiykvePwdLp.kkvkaeek.ewyfFskrdkkya..tgkrknratksgyWkatgkd 89 
                      +p+Gf F P+d el+   ++k v+gk   + ++v+k+++i++++P  L+ + +++ e+  +yfFskr+ +++  +++r+ r+++ g+Wka+ ++
  OGLUM10G08720.1   1 MPVGFYFVPKDLELLAILMCKLVRGKVPGAlNNVFKHIRILEFHPALLHeTYIETMEDgYIYFFSKRQFATKarNKRRPMRVADGGTWKASDES 94 
                      699**********************996551456**************8455655444366****998554433889999*9************ PP

              NAM  90 kevlsk..kgelvglkktLvfy...kgrapkgektdWvmhe 125
                      k+v sk  +g +vg k t+vfy    + ++++ kt+W mhe
  OGLUM10G08720.1  95 KTVRSKkvGGIDVGQKFTMVFYerrFEGDQNPIKTNWGMHE 135
                      ****99888899**********43313456678*******9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100528.7071155IPR003441NAC domain
SuperFamilySSF1019413.27E-291136IPR003441NAC domain
PfamPF023655.8E-132135IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 390 aa     Download sequence    Send to blast
MPVGFYFVPK DLELLAILMC KLVRGKVPGA LNNVFKHIRI LEFHPALLHE TYIETMEDGY  60
IYFFSKRQFA TKARNKRRPM RVADGGTWKA SDESKTVRSK KVGGIDVGQK FTMVFYERRF  120
EGDQNPIKTN WGMHERKEDT EPVNAAATVS STDEPSTPAA LPLPTPPPRP LPDMAGSSSA  180
TSLLPLQLPG LAGSSSTMPL ALPLQLPGLP RSSSVMSLPG LAGEMTSMGH GETGEHGLDA  240
STPSSELPQD WYDEYEVAYG AVAPPAPSTI IWAALPSSPT AWWPPSNGGP MQHDGYLGMA  300
DPASYTLEHL LPTAAIPPEP MAPPKSSPAP PPAVGHHRLS PPHDAAGNYD HLELANYGGV  360
RRSTSIIIII HRSLRMARTA TVPWPTATHS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126180.0CP012618.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 10 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015651177.11e-158NAC transcription factor NAM-B2 isoform X1
TrEMBLA0A0E0BA410.0A0A0E0BA41_9ORYZ; Uncharacterized protein
STRINGOGLUM10G08720.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35632367
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12910.13e-11NAC family protein