PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM10G00640.1

Organism

Oryza glumaepatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

BBR-BPC

Protein Properties

Length: 343aa MW: 37492.7 Da PI: 10.6195

Description

BBR-BPC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM10G00640.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GAGA_bind	303.8	6.2e-93	54	338	1	296
GAGA_bind 1 mdddgsre....rnkg.yyepaaslkenlglqlmssia.erdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkllalllve 88 m+dd+s++ r +g +yep ++nlglqlmss++ +rd+k + + + ++++ ++ +++++ +++rd a+ OGLUM10G00640.1 54 MNDDASMSsmglRGWGaFYEPP---ARNLGLQLMSSVPaDRDTKHLLSATPFLHHHQHQQH----------VPHHHHQPHHPRDCGTNANAN-- 132 7777777667789*999...88*******989999976655544444433222..........223334567788876655544.. PP GAGA_bind 89 nslasalpvgvqvlsgtksidslqqlse..pqledsave.lreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvk 179 + ++vg++++ t+++ +lq++ e pql++++ + ++ee+++ + +ee++ + + +kkrq++k+pk+++ kk+kk +++++++ + OGLUM10G00640.1 133 ---GNGNGVGYGMMLATHTLRMLQHQPEpqPQLQHPPSPpHPKEECISPPLMEENV--PVKPPPPKKRQQGKQPKVPRPKKPKK-PAAPREDGA 220 ...2457999******999999766669999999978999999888877755..5678899999**************.9999* PP GAGA_bind 180 kesad.erskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekL 272 ++sa+ +r++ ++k+i++v+ng++lD s++P+ +CsCtGa++qCY+WG+GGWqSaCCttt+S+yPLP+s krrgaRiagrKmS+gafkk+LekL OGLUM10G00640.1 221 PPSAPaPRRRGPRKNIGMVINGIDLDLSRIPTRICSCTGAPQQCYRWGAGGWQSACCTTTVSTYPLPMSMKRRGARIAGRKMSHGAFKKVLEKL 314 999************************************************************************************* PP GAGA_bind 273 aaeGydlsnpvDLkdhWAkHGtnk 296 a+eGy+l+np+DLk++WAkHGtnk OGLUM10G00640.1 315 ASEGYNLNNPIDLKTFWAKHGTNK 338 *********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01226	1.3E-161	54	338	IPR010409	GAGA-binding transcriptional activator
Pfam	PF06217	2.3E-105	54	338	IPR010409	GAGA-binding transcriptional activator

Sequence ? help Back to Top
Protein Sequence Length: 343 aa Download sequence Send to blast
MAVVGMHGGS WGGGDGGGGV EVEGEGRKWR WKGRHQHGSA YIGGPDRRFG DGKMNDDASM 60 SSMGLRGWGA FYEPPARNLG LQLMSSVPAD RDTKHLLSAT PFLHHHQHQQ HVPHHHHQPH 120 HPRDCGTNAN ANGNGNGVGY GMMLATHTLR MLQHQPEPQP QLQHPPSPPH PKEECISPPL 180 MEENVPVKPP PPKKRQQGKQ PKVPRPKKPK KPAAPREDGA PPSAPAPRRR GPRKNIGMVI 240 NGIDLDLSRI PTRICSCTGA PQQCYRWGAG GWQSACCTTT VSTYPLPMSM KRRGARIAGR 300 KMSHGAFKKV LEKLASEGYN LNNPIDLKTF WAKHGTNKES GAI

Sequence ? help Back to Top

Protein Sequence Length: 343 aa Download sequence Send to blast

MAVVGMHGGS WGGGDGGGGV EVEGEGRKWR WKGRHQHGSA YIGGPDRRFG DGKMNDDASM  60
SSMGLRGWGA FYEPPARNLG LQLMSSVPAD RDTKHLLSAT PFLHHHQHQQ HVPHHHHQPH  120
HPRDCGTNAN ANGNGNGVGY GMMLATHTLR MLQHQPEPQP QLQHPPSPPH PKEECISPPL  180
MEENVPVKPP PPKKRQQGKQ PKVPRPKKPK KPAAPREDGA PPSAPAPRRR GPRKNIGMVI  240
NGIDLDLSRI PTRICSCTGA PQQCYRWGAG GWQSACCTTT VSTYPLPMSM KRRGARIAGR  300
KMSHGAFKKV LEKLASEGYN LNNPIDLKTF WAKHGTNKES GAI

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY570521	0.0	AY570521.1 Oryza sativa (japonica cultivar-group) barley B recombinant like protein C mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015614002.1	0.0	barley B recombinant-like protein C
Swissprot	Q7XH85	1e-164	BBRC_ORYSJ; Barley B recombinant-like protein C
TrEMBL	A0A0E0B770	0.0	A0A0E0B770_9ORYZ; Uncharacterized protein
STRING	OGLUM10G00640.1	0.0	(Oryza glumipatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2211	36	97

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G14685.3	7e-55	basic pentacysteine 2

Publications ? help Back to Top
Rice Chromosome 10 Sequencing Consortium In-depth view of structure, activity, and evolution of rice chromosome 10. Science, 2003. 300(5625): p. 1566-9 [PMID:12791992]