PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | OGLUM10G00620.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
||||||||
Family | BBR-BPC | ||||||||
Protein Properties | Length: 341aa MW: 37754 Da PI: 10.2984 | ||||||||
Description | BBR-BPC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GAGA_bind | 406.6 | 3e-124 | 1 | 341 | 1 | 301 |
GAGA_bind 1 mdddgsre.rnkg.yyepaaslkenlglqlmssia.erdaki...........rernlalsekkaavaerd....................... 57 mddd+s++ r +g ++e+ ++nlglqlmss++ +rd+k+ +++++ +++++++++rd OGLUM10G00620.1 1 MDDDASMSiR-WGgFFESP---ARNLGLQLMSSVPaDRDTKQllsgspflhhqHQQHV-PHHHHQPHHPRDcgangnanggamppspateapps 89 9*******66.777***99...88**********99**************99656666.9********************************** PP GAGA_bind 58 ..maflqrdkalae..rnkalverdnkllalllvensla...salpvgvqvlsgtksidslqqlsepqledsave.lreeeklealpieeaaee 143 m+f+++d++++ +++++++r++k+l++l+v ++++ +++pvg+++++gt++++++qq++epq ++++ + +++ee+++++ iee++++ OGLUM10G00620.1 90 mpMNFVRSDMWMHPqqQQQHHHPREHKALHNLTVGHGSShiaHHDPVGYGMIPGTHTLQMMQQQTEPQPQPPPLPqQPKEECISSPLIEENVPV 183 ************9754778999**************9988999******************************99899**************** PP GAGA_bind 144 akekkkkkkrqrakkpkekkakkkkkksekskkkvkkesad.erskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCt 236 ++e + +kkrq++++pk+++akk+kk s++++++ ++++a+ +r++ ++k+i++v+ng++lD s++P+P+CsCtGa++qCY+WG+GGWqSaCCt OGLUM10G00620.1 184 IDEPPPPKKRQQGRQPKVPRAKKPKK-SAAPREDGAPPNAPaPRRRGPRKNIGMVINGIDLDLSRIPTPICSCTGAPQQCYRWGAGGWQSACCT 276 **************************.88999*******999**************************************************** PP GAGA_bind 237 ttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301 ttiS+yPLP+stkrrgaRiagrKmS+gafkk+LekLa+eGy+l+np+DLk++WAkHGtnkfvtir OGLUM10G00620.1 277 TTISTYPLPMSTKRRGARIAGRKMSHGAFKKVLEKLAGEGYNLNNPIDLKTFWAKHGTNKFVTIR 341 ****************************************************************8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF06217 | 6.5E-118 | 1 | 341 | IPR010409 | GAGA-binding transcriptional activator |
SMART | SM01226 | 1.3E-198 | 1 | 341 | IPR010409 | GAGA-binding transcriptional activator |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 341 aa Download sequence Send to blast |
MDDDASMSIR WGGFFESPAR NLGLQLMSSV PADRDTKQLL SGSPFLHHQH QQHVPHHHHQ 60 PHHPRDCGAN GNANGGAMPP SPATEAPPSM PMNFVRSDMW MHPQQQQQHH HPREHKALHN 120 LTVGHGSSHI AHHDPVGYGM IPGTHTLQMM QQQTEPQPQP PPLPQQPKEE CISSPLIEEN 180 VPVIDEPPPP KKRQQGRQPK VPRAKKPKKS AAPREDGAPP NAPAPRRRGP RKNIGMVING 240 IDLDLSRIPT PICSCTGAPQ QCYRWGAGGW QSACCTTTIS TYPLPMSTKR RGARIAGRKM 300 SHGAFKKVLE KLAGEGYNLN NPIDLKTFWA KHGTNKFVTI R |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000250}. | |||||
UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AC078891 | 0.0 | AC078891.2 Oryza sativa Japonica Group chromosome 10 clone OSJNBa0092N12, complete sequence. | |||
GenBank | AC098694 | 0.0 | AC098694.3 Oryza sativa Japonica Group chromosome 10 clone OJ1014H12, complete sequence. | |||
GenBank | AC145127 | 0.0 | AC145127.1 Oryza sativa Japonica Group chromosome 10 clone Pseudo10p0.0-10p4.4, complete sequence. | |||
GenBank | AK063643 | 0.0 | AK063643.1 Oryza sativa Japonica Group cDNA clone:001-118-H02, full insert sequence. | |||
GenBank | AP014966 | 0.0 | AP014966.1 Oryza sativa Japonica Group DNA, chromosome 10, cultivar: Nipponbare, complete sequence. | |||
GenBank | AY569035 | 0.0 | AY569035.1 Oryza sativa (japonica cultivar-group) barley B recombinant like-protein A mRNA, complete cds. | |||
GenBank | AY569036 | 0.0 | AY569036.1 Oryza sativa (japonica cultivar-group) barley B recombinant like-protein B gene, complete cds. | |||
GenBank | AY569037 | 0.0 | AY569037.1 Oryza sativa (japonica cultivar-group) barley B recombinant like-protein B mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015612725.1 | 0.0 | barley B recombinant-like protein A isoform X1 | ||||
Refseq | XP_015612727.1 | 0.0 | barley B recombinant-like protein A isoform X1 | ||||
Refseq | XP_015612730.1 | 0.0 | barley B recombinant-like protein B isoform X1 | ||||
Refseq | XP_015612731.1 | 0.0 | barley B recombinant-like protein B isoform X1 | ||||
Swissprot | P0DH88 | 0.0 | BBRA_ORYSJ; Barley B recombinant-like protein A | ||||
Swissprot | P0DH89 | 0.0 | BBRB_ORYSJ; Barley B recombinant-like protein B | ||||
TrEMBL | A0A0E0B768 | 0.0 | A0A0E0B768_9ORYZ; Uncharacterized protein | ||||
STRING | OGLUM10G00620.1 | 0.0 | (Oryza glumipatula) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2211 | 36 | 97 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G14685.3 | 2e-60 | basic pentacysteine 2 |
Publications ? help Back to Top | |||
---|---|---|---|
|