PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM09G19470.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 369aa    MW: 40400.4 Da    PI: 4.848
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM09G19470.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM175.12e-541182471128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                      lppGfrFhPtdeelv++yLk+k++g k+el ++i+evd+yk+ePw+L  k  + +++ ewyfF +rd+ky++g r+nrat++gyWk+tgkd++v
  OGLUM09G19470.1 118 LPPGFRFHPTDEELVNYYLKRKIHGLKIEL-DIIPEVDLYKCEPWELAeKsFLPSRDPEWYFFGPRDRKYPNGFRTNRATRAGYWKSTGKDRRV 210
                      79****************************.99**************84335556888************************************ PP

              NAM  93 lsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                      +++ +g+++g+kktLv+y+grap+g++tdWvmheyrl
  OGLUM09G19470.1 211 VHQhGGRAIGMKKTLVYYRGRAPQGVRTDWVMHEYRL 247
                      99978899***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.83E-64110270IPR003441NAC domain
PROSITE profilePS5100560.881118270IPR003441NAC domain
PfamPF023651.7E-29119247IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 369 aa     Download sequence    Send to blast
MEKVQASCEG DQGICKRGAK GGHPIDQNLV GGMTMSTGVP TTVPPTPALA ALKNLLIRVV  60
AAAAGKGLSS SAEEARCLWA KLPAPEEEEE EAGQQPEIRP PSSYRRPPTP TLMAPVGLPP  120
GFRFHPTDEE LVNYYLKRKI HGLKIELDII PEVDLYKCEP WELAEKSFLP SRDPEWYFFG  180
PRDRKYPNGF RTNRATRAGY WKSTGKDRRV VHQHGGRAIG MKKTLVYYRG RAPQGVRTDW  240
VMHEYRLDDK DCEDTMPIQD TYALCRVFKK NAICTEVELQ GQCSMALLEG ACQQLLASGG  300
GGSQEQYETP SPPDVPVGST SGGADADAEA EDDPDKDDSW MQFISDDAWC SSTADGGAEE  360
STSCVALAG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A5e-5111427011168Stress-induced transcription factor NAC1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00363DAPTransfer from AT3G17730Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126170.0CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015612702.20.0NAC domain-containing protein 86
TrEMBLA0A0E0B6910.0A0A0E0B691_9ORYZ; Uncharacterized protein
STRINGOGLUM09G19470.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP37133879
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G17730.11e-115NAC domain containing protein 57