PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM09G19240.3

Organism

Oryza glumaepatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

Nin-like

Protein Properties

Length: 841aa MW: 92487.8 Da PI: 6.622

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM09G19240.3	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	91.7	5.5e-29	527	577	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek++sl++l++yF++++kdAAk+Lgvc+T+LKriCRq+GI+RWP+Rkik++ OGLUM09G19240.3 527 EKTVSLQVLRQYFAGSLKDAAKSLGVCPTTLKRICRQHGINRWPSRKIKKV 577 799**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.734	516	597	IPR003035	RWP-RK domain
Pfam	PF02042	9.7E-26	529	577	IPR003035	RWP-RK domain
SuperFamily	SSF54277	1.6E-20	734	830	No hit	No description
SMART	SM00666	8.0E-18	744	827	IPR000270	PB1 domain
PROSITE profile	PS51745	18.398	744	827	IPR000270	PB1 domain
Gene3D	G3DSA:3.10.20.240	3.6E-24	744	825	No hit	No description
CDD	cd06407	3.31E-43	745	825	No hit	No description
Pfam	PF00564	4.0E-15	745	825	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 841 aa Download sequence Send to blast
MEEGDPQPSI SLARTPSEGA AAAVDLDLLE QLLSADNAWL EVAANTSRSP NFFATPSNCL 60 TDASVATTTP ANSWWIQPSG ASTSVRERFD QALAYIRETQ SDANVLVQLW VPVKGNDGQL 120 VLTTSGQPFT LDQRSNSLIQ FREVSTKYQF SADVASGSSP GLPGRVFIGR LPEWSPDVRY 180 FTSYEYPRIS HAQYLDVHGT MGLPVFERGN SSCLGVIELI MTKQKLNFTS ELNTICSALQ 240 AVNLTSTEVS SIPRTKLNSA SYKDALPEIL EVLRAACITH KLPLAQTWVT CAQQGKRGSR 300 HSDENYKYCI STIDAACYVN EPQMQSFHEA CSEHHLLQGQ GVAGKAFTTN QPCFLPDIGS 360 STKLEYPLSH HAKIFNLKGA VAIRLRCTRT GIADFVLEFF LPTDCEVLEE QKAVLDSLSG 420 TMRSVCQTLR VVTDKEMEDE AMREMNELNS FSPQGKNKVE ELSFGDNTRE DREETSWTTL 480 VGTSQKGSDL AELHTHGMLS HGGQGSSQAG DQTSKEGSKV KRRTKTEKTV SLQVLRQYFA 540 GSLKDAAKSL GVCPTTLKRI CRQHGINRWP SRKIKKVDHS LRKLQQIIDS VHGAETAFQL 600 NTLYKDLTNT SVSSDNNLSG SVTVPLANQN NLDFEKHQHH RLSSNIPSTS LSHSSCSQSS 660 DSSPSCSGGA TKHSPQVGAD QVRLGCLPQH SPVQTLHTEA ASINEHFSGQ EAPIDLLQDV 720 AEKANGEQHM SQSPSSPKQT ANVGMRVKVT FGSEKVRFRL KPECDFQELK QEISKRLSIV 780 DMNSLIVKYL DDDSEWVLMT CDADLHECFH VYKLADIQTI KISVHLAASP TRITIGHTGF 840 S

Sequence ? help Back to Top

Protein Sequence Length: 841 aa Download sequence Send to blast

MEEGDPQPSI SLARTPSEGA AAAVDLDLLE QLLSADNAWL EVAANTSRSP NFFATPSNCL  60
TDASVATTTP ANSWWIQPSG ASTSVRERFD QALAYIRETQ SDANVLVQLW VPVKGNDGQL  120
VLTTSGQPFT LDQRSNSLIQ FREVSTKYQF SADVASGSSP GLPGRVFIGR LPEWSPDVRY  180
FTSYEYPRIS HAQYLDVHGT MGLPVFERGN SSCLGVIELI MTKQKLNFTS ELNTICSALQ  240
AVNLTSTEVS SIPRTKLNSA SYKDALPEIL EVLRAACITH KLPLAQTWVT CAQQGKRGSR  300
HSDENYKYCI STIDAACYVN EPQMQSFHEA CSEHHLLQGQ GVAGKAFTTN QPCFLPDIGS  360
STKLEYPLSH HAKIFNLKGA VAIRLRCTRT GIADFVLEFF LPTDCEVLEE QKAVLDSLSG  420
TMRSVCQTLR VVTDKEMEDE AMREMNELNS FSPQGKNKVE ELSFGDNTRE DREETSWTTL  480
VGTSQKGSDL AELHTHGMLS HGGQGSSQAG DQTSKEGSKV KRRTKTEKTV SLQVLRQYFA  540
GSLKDAAKSL GVCPTTLKRI CRQHGINRWP SRKIKKVDHS LRKLQQIIDS VHGAETAFQL  600
NTLYKDLTNT SVSSDNNLSG SVTVPLANQN NLDFEKHQHH RLSSNIPSTS LSHSSCSQSS  660
DSSPSCSGGA TKHSPQVGAD QVRLGCLPQH SPVQTLHTEA ASINEHFSGQ EAPIDLLQDV  720
AEKANGEQHM SQSPSSPKQT ANVGMRVKVT FGSEKVRFRL KPECDFQELK QEISKRLSIV  780
DMNSLIVKYL DDDSEWVLMT CDADLHECFH VYKLADIQTI KISVHLAASP TRITIGHTGF  840
S

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP005679	0.0	AP005679.2 Oryza sativa Japonica Group genomic DNA, chromosome 9, BAC clone:OJ1210_A07.
GenBank	AP014965	0.0	AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence.
GenBank	CP012617	0.0	CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015612116.1	0.0	protein NLP1-like isoform X2
Refseq	XP_015612117.1	0.0	protein NLP1-like isoform X2
Refseq	XP_025875998.1	0.0	protein NLP1-like isoform X2
TrEMBL	A0A0E0B657	0.0	A0A0E0B657_9ORYZ; Uncharacterized protein
STRING	OGLUM09G19240.1	0.0	(Oryza glumipatula)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76350.1	0.0	Nin-like family protein