PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OGLUM09G15640.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | NAC | ||||||||
Protein Properties | Length: 702aa MW: 77178.1 Da PI: 4.5407 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 147.9 | 5.4e-46 | 11 | 143 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 ppGfrF+Ptdeelv ++Lk+++++ + + i++vd+yk++P++Lp+ ++++++k+w+fFs+ d+ky++g+r++r+t +gyWkatgkd++++ OGLUM09G15640.1 11 PPGFRFSPTDEELVLYFLKRRIATGRPTP--YIADVDVYKSHPSHLPErsALRTGDKQWFFFSRMDRKYPNGTRASRTTGEGYWKATGKDRSIC 102 8*********************9999555..6**************9435778899************************************** PP NAM 94 sk......kgelvglkktLvfykgrapkgektdWvmheyrl 128 + +g++vg kktLv+++grap+ge+tdWvmhey+l OGLUM09G15640.1 103 NGggggaaSGRAVGSKKTLVYHHGRAPRGERTDWVMHEYTL 143 *98877777777***************************87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.14E-51 | 7 | 166 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 51.573 | 10 | 166 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.4E-24 | 11 | 143 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 702 aa Download sequence Send to blast |
MGMENPPLRW PPGFRFSPTD EELVLYFLKR RIATGRPTPY IADVDVYKSH PSHLPERSAL 60 RTGDKQWFFF SRMDRKYPNG TRASRTTGEG YWKATGKDRS ICNGGGGGAA SGRAVGSKKT 120 LVYHHGRAPR GERTDWVMHE YTLLADALPP AARDREAYAL YKLFHKSGAG PKNGEQYGAP 180 FREEDWLDDD DHHHDQLPAE AALPAPATTS GRAATTEEHA DFELPGGDLD VLLAQIENDQ 240 DIIEAQLDFS THVTSQVQIQ HRVHQGWLSD DGGKSDVADA TTSGSALLMA ENTCAELPID 300 GLEQLLMQIS DDQQTVEMLS GFSASVPQSQ LQHDDHQGCL GVHREEVGVA DSTTVSSAVV 360 TEECTVRELQ DIEGLLMQIE NDQENAESLP DFSTPVHLHD CHQAAFGDFQ GSQRATFNIA 420 NLSTMVQESP NFDLQTGPSN QITESILTTE PMNGETNAVE ETSPLRSMSV LGSYDRQDGD 480 DEFLEINDFF DPEDLEQILG STTSQNLIPA DDGVFDSLQY SDAPMFLPGS FDTTGVVAEN 540 HYVEFGASGI QNQGFQHTTE LWAHNQVALN VRNHMKDNHV VFSHSSDATI IHTVNEQPPN 600 RSSNASQSWF NGALSALLDS VPSSPAMAAE NIGLNRTLQR ISSFRSQQPA REEVSSTLIN 660 TRRRGGGLIF ISLMVLLVAI MWTFSNGSAV KLSKGLWKFP ST |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 7e-43 | 8 | 143 | 13 | 140 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK068501 | 0.0 | AK068501.1 Oryza sativa Japonica Group cDNA clone:J013155B08, full insert sequence. | |||
GenBank | AK099237 | 0.0 | AK099237.1 Oryza sativa Japonica Group cDNA clone:J013112C23, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015611740.1 | 0.0 | NAC domain-containing protein 17 isoform X1 | ||||
TrEMBL | A0A0E0B4S1 | 0.0 | A0A0E0B4S1_9ORYZ; Uncharacterized protein | ||||
STRING | OGLUM09G15640.1 | 0.0 | (Oryza glumipatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP9128 | 28 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G34180.1 | 2e-62 | NAC domain containing protein 16 |