PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OGLUM09G15430.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | SBP | ||||||||
Protein Properties | Length: 401aa MW: 41615.1 Da PI: 8.5722 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 119.2 | 2e-37 | 74 | 157 | 1 | 77 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTS.......SEEETTT--SS--S-STTTT-------S-- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCs.......rfhelsefDeekrsCrrrLakhnerrrkkq 77 +CqvegC +dls +k y+ rhkvC +h+k p v+v+gleqrfCqqCs rfh+l efD+ek+sCrrrLa+hnerrrk++ OGLUM09G15430.1 74 RCQVEGCGVDLSGVKPYYCRHKVCYMHAKEPIVVVAGLEQRFCQQCSrcsvhmvRFHQLPEFDQEKKSCRRRLAGHNERRRKPT 157 6*********************************************955555555***************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 5.7E-30 | 71 | 143 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 28.667 | 72 | 156 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 5.89E-36 | 73 | 159 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 1.5E-27 | 75 | 155 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010228 | Biological Process | vegetative to reproductive phase transition of meristem | ||||
GO:0048653 | Biological Process | anther development | ||||
GO:2000025 | Biological Process | regulation of leaf formation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 401 aa Download sequence Send to blast |
MATGGSGGGG GGGGGGDDVH GLKFGKKIYF EQDAAASASA AAVESSSTSS GGGGKKGKGV 60 AAAAAAPPPP PPPRCQVEGC GVDLSGVKPY YCRHKVCYMH AKEPIVVVAG LEQRFCQQCS 120 RCSVHMVRFH QLPEFDQEKK SCRRRLAGHN ERRRKPTPGP LSSRYGRLAA SFHEEPGRSR 180 SFVVDFSYPR VPSSVRDAWP AIQPGDRMSG SIQWQGGHEL HPHRSAVAGY GDHHAFSSHG 240 GSAAGAPMLH HPAFELTSGG CLAGVATDSS CALSLLSTQP WDITQSTSSH NRSPPMSSTA 300 SAFGGGNNPV SPSVMASNYM AASPGWNSSS RGHDGARNVH LPPPHGVALN EVPTGSVHHG 360 HFSGELELAL QGGAPSNRPE AEHGSGSGAF SHSTNAINWS L |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 5e-26 | 75 | 155 | 11 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00307 | DAP | Transfer from AT2G42200 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Negatively regulated by microRNAs miR156b and miR156h. {ECO:0000305|PubMed:16861571}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK063561 | 0.0 | AK063561.1 Oryza sativa Japonica Group cDNA clone:001-117-F03, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015610961.1 | 0.0 | squamosa promoter-binding-like protein 17 isoform X1 | ||||
Swissprot | A3C057 | 0.0 | SPL17_ORYSJ; Squamosa promoter-binding-like protein 17 | ||||
TrEMBL | A0A0E0B4P2 | 0.0 | A0A0E0B4P2_9ORYZ; Uncharacterized protein | ||||
STRING | OGLUM09G15430.1 | 0.0 | (Oryza glumipatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2527 | 37 | 87 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G42200.1 | 1e-41 | squamosa promoter binding protein-like 9 |