PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM09G14430.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 1136aa    MW: 124351 Da    PI: 8.497
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM09G14430.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH54.22.6e-17864913255
                      HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      r +h++ E+rRR++iN++f+ LrellP++    ++K +Ka+ L +++eYI+ Lq
  OGLUM09G14430.1 864 RSKHSATEQRRRSKINDRFQILRELLPHS----DQKRDKATFLLEVIEYIRFLQ 913
                      889*************************9....9*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS513756.423437467IPR002885Pentatricopeptide repeat
PfamPF015350.48442468IPR002885Pentatricopeptide repeat
PROSITE profilePS513759.449468502IPR002885Pentatricopeptide repeat
PfamPF015350.23470495IPR002885Pentatricopeptide repeat
PROSITE profilePS513757.684591621IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007560.0019596620IPR002885Pentatricopeptide repeat
PfamPF015350.011596619IPR002885Pentatricopeptide repeat
PROSITE profilePS5137511.553624658IPR002885Pentatricopeptide repeat
PfamPF130412.4E-11624670IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007569.3E-7626659IPR002885Pentatricopeptide repeat
PROSITE profilePS513757.366659694IPR002885Pentatricopeptide repeat
PROSITE profilePS513755.974695725IPR002885Pentatricopeptide repeat
PROSITE profilePS513757.103763797IPR002885Pentatricopeptide repeat
SuperFamilySSF474591.44E-18859930IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.6E-23860933IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.06E-16860917No hitNo description
PROSITE profilePS5088816.952862912IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.7E-15864913IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.6E-13868918IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 1136 aa     Download sequence    Send to blast
MFDSRQYGAA TRAAGNHHPR HRRRRSQAKP SEAKQREAKG RKACLVERRG LSSSRVGILA  60
LSPRHDWSGE RSRRVGSGGG REAVGLISEL QLWASKATTR EHDFLSLYTT AAKDPSLQLH  120
DAKPPHPSQG FFLRTHDFLQ PLEKPTPAPA PPPTSQLQQQ QQQAFPGGIG TFSISHVAGA  180
RPVAAAVVKA EPTPFVLWGQ PAAAAAAHPV AALGHHHHHH HQWTLPFAGV GQVAATAARQ  240
QQERKGRVGG GGFMDSGSRS SGGAGFDDDD GVAARREVSS SLKERRREGR GEEGRRRSRE  300
LMEMEMEMYS RCARPSHIHQ LHARLVVSGR LRCTSPSLAL ALLRAACRVR ASPCLRPLAH  360
HLLDHIPRPH PHLLHAAARL AYRLRLPSLA LRHYVALRTH HPVFLPPAAA IADMLKSVRG  420
RAAHAHALRV TAHAGDTRFL DNTLIAMYFA CGDVQRARLV FEGMCDRDVI SWTSLISGLV  480
QNGSPLQGIQ QFATMMHCDV RPDFVVLVTI AKAFMELDNL PGAESAHSLV VKGGFHDEQD  540
VMITLTAMYA SFGCLVAARA LFDMVPPQQL GSTELAAWME DCVCRSEYRE DVLVNTALID  600
MYAKSGSISH ARAVFERMHV DDRDVVVWSA LITGYGVQGL VNEACTLFQD MKLAGVRPND  660
VTFLGLLSAC NHAGAVEKGW SYFHSMKPDY GIEPQHQHYA CVVDLLSRAG QLDRAYQFIL  720
NMPIKPEMTV WGALLHGCKM HGHSNMAMAE CAAQHIFELE QSNAGHYVQL ANMYASAGMW  780
SQVAGMRVTM RERGVTKATG FSFIEVDGEM HSFHAWDHSH PRATEIFAML CLLSPTPTGG  840
EMRVDGKGGS CSGSGTDQRP SSPRSKHSAT EQRRRSKIND RFQILRELLP HSDQKRDKAT  900
FLLEVIEYIR FLQEKVQKFE ASVPEWNQEN AKILPWSKGQ NPGDDLPDPS QFIRNGSSSG  960
YNFTGKPDDN HNMVTSAAAS GAQELVETDH AASVSYRSAE TPTNITNNVT SQAQAQWASP  1020
AGVDDCAMNS EMLNNQQLAI DEGTISLSSQ YSQQLLGTLT HALESSGVDL SQASISVQIN  1080
LGKRAVKRPG ADGSSSSKEL PSTSANNENM GHQLMMLGGG TEELPHPTKR HKSGNS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5iww_D6e-3144272917330PLS9-PPR
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1018960.0AK101896.1 Oryza sativa Japonica Group cDNA clone:J033070P13, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012699577.10.0pentatricopeptide repeat-containing protein At3g12770
TrEMBLA0A0E0B4B30.0A0A0E0B4B3_9ORYZ; Uncharacterized protein
STRINGOGLUM09G14430.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP76237128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69010.14e-50BES1-interacting Myc-like protein 2