PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OGLUM09G14350.3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | bHLH | ||||||||
Protein Properties | Length: 1060aa MW: 114229 Da PI: 7.4693 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 28.1 | 3.6e-09 | 889 | 937 | 3 | 55 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + sk Ka +L + ++Y++sLq OGLUM09G14350.3 889 NSHSLAERLRREKISERMKLLQDLVPGC----SKVTGKAVMLDEIINYVQSLQ 937 58*************************9....556*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.25.40.10 | 2.2E-9 | 58 | 204 | IPR011990 | Tetratricopeptide-like helical domain |
PROSITE profile | PS51375 | 5.853 | 77 | 111 | IPR002885 | Pentatricopeptide repeat |
PROSITE profile | PS51375 | 5.93 | 112 | 142 | IPR002885 | Pentatricopeptide repeat |
Pfam | PF01535 | 0.34 | 116 | 138 | IPR002885 | Pentatricopeptide repeat |
PROSITE profile | PS51375 | 8.835 | 143 | 173 | IPR002885 | Pentatricopeptide repeat |
TIGRFAMs | TIGR00756 | 0.0015 | 145 | 174 | IPR002885 | Pentatricopeptide repeat |
Pfam | PF01535 | 0.059 | 145 | 172 | IPR002885 | Pentatricopeptide repeat |
Pfam | PF13041 | 2.2E-9 | 174 | 220 | IPR002885 | Pentatricopeptide repeat |
PROSITE profile | PS51375 | 10.446 | 174 | 204 | IPR002885 | Pentatricopeptide repeat |
TIGRFAMs | TIGR00756 | 5.4E-8 | 176 | 210 | IPR002885 | Pentatricopeptide repeat |
PROSITE profile | PS51375 | 5.568 | 210 | 244 | IPR002885 | Pentatricopeptide repeat |
Gene3D | G3DSA:1.25.40.10 | 2.2E-9 | 239 | 304 | IPR011990 | Tetratricopeptide-like helical domain |
PROSITE profile | PS51375 | 6.16 | 245 | 275 | IPR002885 | Pentatricopeptide repeat |
Pfam | PF01535 | 0.19 | 250 | 270 | IPR002885 | Pentatricopeptide repeat |
Pfam | PF13041 | 1.8E-11 | 277 | 324 | IPR002885 | Pentatricopeptide repeat |
PROSITE profile | PS51375 | 11.652 | 277 | 311 | IPR002885 | Pentatricopeptide repeat |
TIGRFAMs | TIGR00756 | 1.1E-6 | 280 | 312 | IPR002885 | Pentatricopeptide repeat |
PROSITE profile | PS51375 | 8.385 | 312 | 347 | IPR002885 | Pentatricopeptide repeat |
TIGRFAMs | TIGR00756 | 7.8E-5 | 314 | 349 | IPR002885 | Pentatricopeptide repeat |
Pfam | PF12854 | 1.4E-6 | 344 | 375 | IPR002885 | Pentatricopeptide repeat |
PROSITE profile | PS51375 | 8.901 | 348 | 378 | IPR002885 | Pentatricopeptide repeat |
TIGRFAMs | TIGR00756 | 4.7E-4 | 352 | 375 | IPR002885 | Pentatricopeptide repeat |
Pfam | PF14432 | 3.9E-39 | 419 | 539 | IPR032867 | DYW domain |
CDD | cd00083 | 1.27E-10 | 884 | 941 | No hit | No description |
SuperFamily | SSF47459 | 2.22E-16 | 884 | 954 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.65 | 886 | 936 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 5.1E-16 | 887 | 953 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.9E-6 | 889 | 937 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 5.2E-11 | 892 | 942 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 1060 aa Download sequence Send to blast |
MPPPTVPFFL TSTTLAAAAA KPQRPGPPSP PAQQQQPREA RDGSRDACAS YTARMRLNPQ 60 LALRLFDHLL RSGADPDHVA YALALGRCAR GRDRRAAAQL HAHAAKRGAA SHRRVCNGLI 120 HAYAVCGSLL DARKVFDRGH EGDAVAWNSL LRGYAAAGDV NALREFFVGM QARDTVSWNT 180 IIAWCVENGE YEEAIAVFRE MLASMECLPD RVTLVSVISA ITYLGALAQG LWAHAYVCRK 240 GIEVEERLSS ALINMYSKCG CIEGAVHVFE NLGAQMNVDT WNAMLAGFTA NGCSEKALEL 300 FARMEITGLV PNKITFNTVL NACSHGGFVE EGMGCFEIMT KVYGIEPDIA HYGCMVDLFC 360 RAGLFDKAEK MIQMMPMKPD AAVWKALVGA CKTHRNFELG RKAGHMLIEA APNDHAGSIE 420 IDGVIHEFIS GDKSHSSKED IYEMLSEMCQ QLKVAGYVPD TSHVLLDIDD EDVKESSLAL 480 HSEKLAIAFG LISTAPGTPI RIAKNLRVCG DCHNAVKLLS KIYGRCIIVR DANRFHHFRE 540 GSCSCGDFWN PLLLLAPDGP LPTGAGRSTG KCLVSRPASA AVHNTGKRRA CPVFSKGATN 600 EKKRRAGRDR RQALLKERKL GIRSLEPRLG DSMDMSESSE KGMESNASSG PGNGIPVEWQ 660 SQFSSAFACQ PSVAAQHQQH AMMDSFAAAS AGLWASSDVV SAMSSAAPPR GAGFLAPVPG 720 FLQQGLGHFP VDSGFIERAA RSTCFGGGMM AGGPYGAADQ AMGDAFGGTA EGLMDHHRNV 780 GNDKAEEFAG NGHDEVPSSE VAGGDCFSKG SDSKKRRRPN EVMGTDQVHS SNLPSDSANE 840 SVHSKDKGEE SSPATTNGGK SKGKGAKETS ESQKEEYIHV RARRGQATNS HSLAERLRRE 900 KISERMKLLQ DLVPGCSKVT GKAVMLDEII NYVQSLQRQV EFLSMKLATV NPRLDLNIEG 960 LLSKDLLRFP GVPSSSIGFS PEMMHPQLQL SQPGLIHGGT AGMANPDVFR RIIQAQLGAK 1020 DGSQMPHSLN GSFSDVSQMA YPSLGSQDLS IRPSQDGFQM |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5iww_D | 1e-43 | 62 | 411 | 12 | 338 | PLS9-PPR |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 586 | 604 | KRRACPVFSKGATNEKKRR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK121418 | 0.0 | AK121418.1 Oryza sativa Japonica Group cDNA clone:J023133H05, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015612413.1 | 0.0 | pentatricopeptide repeat-containing protein At5g48910 isoform X1 | ||||
TrEMBL | A0A0E0B4A2 | 0.0 | A0A0E0B4A2_9ORYZ; Uncharacterized protein | ||||
STRING | OGLUM09G14350.4 | 0.0 | (Oryza glumipatula) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68920.3 | 9e-66 | bHLH family protein |